当前解析结果
SmilChr05G001926| 统一新 Gene ID | SmilChr05G001926 |
|---|---|
| 名称 | SmilChr05G001926 |
| 描述 | auxilin-like protein 1 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 19528881 - 19537029 / + |
| NCBI Gene ID | LOC130986576 |
|---|---|
| GeneID | 130986576 |
| locus_tag | - |
| NCBI Name | LOC130986576 |
| 原始查询 | LOC130986576 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | auxilin-like protein 1 |
| 产物 | auxilin-like protein 1 |
| Arabidopsis | AT1G75310 (AUL1)auxin-like 1 protein [Source:NCBI gene (formerly Entrezgene);Acc:843868] identity=58; qcov=0.186; evalue=3.42e-85; confidence=weak |
| Rice | Os05g0579900 (OsDjC52)- identity=61; qcov=0.187; evalue=8.52e-90; confidence=weak |
| GO | GO:0005737 (cytoplasm); GO:0030276 (clathrin binding); GO:0031982 (vesicle); GO:0043231 (intracellular membrane-bounded organelle); GO:0072318 (clathrin coat disassembly); GO:0072583 (clathrin-dependent endocytosis) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986576 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057765999.1 |
| 2 | Cytoskeleton | 细胞骨架 | 0.40000 | XP_057765999.1 |
| 3 | Cell membrane | 细胞膜 | 0.20000 | XP_057765999.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057765999.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057765999.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:19529501 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B83,C10,C52 |
Chr5:19530694 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:19531344 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B74,C45 |
Chr5:19531620 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B33 |
Chr5:19531732 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B137,B55,D7 |
Chr5:19531757 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | C3 |
Chr5:19531757 |
GA |
G |
1bp_deletion | CDS_variant | 1 | C3 |
Chr5:19531904 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B32 |
Chr5:19532081 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B57 |
Chr5:19532102 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B57 |
Chr5:19532250 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A3,B42 |
Chr5:19532319 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A3,B140,B22,B42,D10 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。