Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001934`

染色体: Chr05 坐标: 19681893-19685650 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001934`
名称	SmilChr05G001934
描述	mitogen-activated protein kinase homolog NTF3
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	19681893 - 19685650 / `+`

ID 对照

NCBI Gene ID	`LOC130986592`
GeneID	`130986592`
locus_tag	`-`
NCBI Name	`LOC130986592`
原始查询	`LOC130986592`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	mitogen-activated protein kinase homolog NTF3
产物	mitogen-activated protein kinase homolog NTF3
Arabidopsis	`AT1G10210` (MPK1) mitogen-activated protein kinase 1 [Source:NCBI gene (formerly Entrezgene);Acc:837559] identity=84.9; qcov=0.995; evalue=0; confidence=high
Rice	`Os02g0148100` (OsMAPK33) - identity=83.4; qcov=0.989; evalue=0; confidence=high
GO	GO:0004707 (MAP kinase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0006468 (protein phosphorylation); GO:0035556 (intracellular signal transduction)
KEGG	smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage))
Pfam	PF00069 (Pkinase); PF06293 (Kdo); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:130986592

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057766023.1`
2	Cytoplasm	细胞质	1.00000	`XP_057766023.1`
3	Cytosol	细胞质基质	0.60000	`XP_057766023.1`
4	Chromosome	染色体	0.00000	`XP_057766023.1`
5	Centromere	着丝粒	0.00000	`XP_057766023.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:19683226`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A4,B1,B68
`Chr5:19684790`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B105,B16
`Chr5:19685038`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B19
`Chr5:19685156`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B42,D10
`Chr5:19685189`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr5:19685216`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B3,C6,C79
`Chr5:19685259`	`AT`	`A`	1bp_deletion	frameshift_variant	2	B131,B95
`Chr5:19685259`	`AT`	`A`	1bp_deletion	CDS_variant	2	B131,B95
`Chr5:19685298`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr5:19685327`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B137,B3,C6,C79

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766023.1

372 aa

186

372

Pkinase

PK_Tyr_Ser-Thr

Kdo

PF00069 Pkinase 33-319 aa PF07714 PK_Tyr_Ser-Thr 36-228 aa PF06293 Kdo 61-170 aa

XP_057766024.1

372 aa

186

372

Pkinase

PK_Tyr_Ser-Thr

Kdo

PF00069 Pkinase 33-319 aa PF07714 PK_Tyr_Ser-Thr 36-228 aa PF06293 Kdo 61-170 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766023.1`	Pfam	`PF00069`	Pkinase	Domain	33	319	3.4e-69	233.9	Protein kinase domain
`XP_057766023.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	36	228	2.2e-31	109.8	Protein tyrosine and serine/threonine kinase
`XP_057766023.1`	Pfam	`PF06293`	Kdo	Family	61	170	4.3e-07	30.3	Lipopolysaccharide kinase (Kdo/WaaP) family
`XP_057766024.1`	Pfam	`PF00069`	Pkinase	Domain	33	319	3.4e-69	233.9	Protein kinase domain
`XP_057766024.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	36	228	2.2e-31	109.8	Protein tyrosine and serine/threonine kinase
`XP_057766024.1`	Pfam	`PF06293`	Kdo	Family	61	170	4.3e-07	30.3	Lipopolysaccharide kinase (Kdo/WaaP) family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057910041.1
GCGTGCGCGTGTTTACTTCATTAGTGATCCGCACTCTGTTTGCTTTAGATAGCTACCGTATAACGAATCCTAACATTTACTTTCAATTATTTTTTTCCTTTAAAATAACAAGATATTAATATTATCCACAAATTATCTGTTGCAGTGAAAAACAACAGAAAATTGAGGTAAATTATTGCTGCAGATCCTTCTGCTGCAATTCTGTGAATTCGAAGCAAGTTCCAGGGTTTAGGGCTAATTTGAGCAATTAGTGGGAATTC...

XM_057910040.1
TTAGATAGCTACCGTATAACGAATCCTAACATTTACTTTCAATTATTTTTTTCCTTTAAAATAACAAGATATTAATATTATCCACAAATTATCTGTTGCAGTGAAAAACAACAGAAAATTGAGGTAAATTATTGCTGCAGATCCTTCTGCTGCAATTCTGTGAATTCGAAGCAAGTTCCAGGTGAATTCACCTTTTGACTCGAGTGAAATTCCTCCATAATCTATCGCAATTTGAGTGAAATTAGCGCTGAATCGGAGCT...

CDS

2 records

下载 CDS FASTA

LOC130986592
ATGGCAACTCCAGTGGAACCTCCAAATGGGGTAAGATCTCAAGGAAAACATTACTACTCCATGTGGCAGACGCTTTTTGAGATTGATACAAAATATGTTCCAATCAAGCCCATTGGTCGAGGTGCCTATGGCATAGTGTGTTCTTCAGTTAACAGAGAAACTAATGAAAAGGTTGCTATCAAGAAGATTCACAATGCCTTTGAAAATCGTGTCGATGCACTAAGAACTTTGCGCGAGCTGAAGCTTCTCCGGCATCTCAG...

Protein

2 records

下载 Protein FASTA

XP_057766023.1
MATPVEPPNGVRSQGKHYYSMWQTLFEIDTKYVPIKPIGRGAYGIVCSSVNRETNEKVAIKKIHNAFENRVDALRTLRELKLLRHLRHENVIALKDVMLPIQKGSFKDVYLVYELMDTDLHQIVKSSQALTNDHCQYFLFQLLRGLKYLHSANILHRDLKPGNLLINANCDLKICDFGLARTSSSKGQFMTEYVVTRWYRAPELLLCCDNYGTSIDVWSVGCIFAELLGRKPIFPGTECLNQLKLIINILGSQKEDDLDF...

XP_057766024.1
MATPVEPPNGVRSQGKHYYSMWQTLFEIDTKYVPIKPIGRGAYGIVCSSVNRETNEKVAIKKIHNAFENRVDALRTLRELKLLRHLRHENVIALKDVMLPIQKGSFKDVYLVYELMDTDLHQIVKSSQALTNDHCQYFLFQLLRGLKYLHSANILHRDLKPGNLLINANCDLKICDFGLARTSSSKGQFMTEYVVTRWYRAPELLLCCDNYGTSIDVWSVGCIFAELLGRKPIFPGTECLNQLKLIINILGSQKEDDLDF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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