Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G001980`

染色体: Chr05 坐标: 20448767-20454671 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G001980`
名称	SmilChr05G001980
描述	auxin response factor 5
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	20448767 - 20454671 / `-`

ID 对照

NCBI Gene ID	`LOC130986633`
GeneID	`130986633`
locus_tag	`-`
NCBI Name	`LOC130986633`
原始查询	`LOC130986633`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	auxin response factor 5
产物	auxin response factor 5
Arabidopsis	`AT1G19850` (MP) Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein [Source:NCBI gene (formerly Entrezgene);Acc:838573] identity=58.8; qcov=1.03; evalue=0; confidence=high
Rice	`Os04g0664400` (OsARF11) - identity=67.4; qcov=0.498; evalue=0; confidence=medium
GO	GO:0003677 (DNA binding); GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription); GO:0009725 (response to hormone)
KEGG	smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF02309 (AUX_IAA); PF02362 (B3); PF06507 (ARF_AD)
InterPro	-
eggNOG	-
NR	GeneID:130986633

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057766076.1`
2	Chromosome	染色体	0.00000	`XP_057766076.1`
3	Centromere	着丝粒	0.00000	`XP_057766076.1`
4	Chromatin	染色质	0.00000	`XP_057766076.1`
5	Telomere	端粒	0.00000	`XP_057766076.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:20448935`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr5:20449147`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B59
`Chr5:20449147`	`TC`	`T`	1bp_deletion	CDS_variant	1	B59
`Chr5:20449203`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B107,B80
`Chr5:20449248`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B130,D10
`Chr5:20449420`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B79
`Chr5:20449457`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C33
`Chr5:20449801`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B62,C34
`Chr5:20449910`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B104,B122,C14
`Chr5:20450018`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr5:20450043`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D1
`Chr5:20450100`	`AC`	`A`	1bp_deletion	frameshift_variant	1	C86

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766076.1

918 aa

459

918

ARF_AD

AUX_IAA

PF02362 B3 146-247 aa PF06507 ARF_AD 295-377 aa PF02309 AUX_IAA 856-899 aa

XP_057766077.1

918 aa

459

918

ARF_AD

AUX_IAA

PF02362 B3 146-247 aa PF06507 ARF_AD 295-377 aa PF02309 AUX_IAA 856-899 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766076.1`	Pfam	`PF02362`	B3	Domain	146	247	6.2e-22	78.2	B3 DNA binding domain
`XP_057766076.1`	Pfam	`PF06507`	ARF_AD	Domain	295	377	5.5e-34	116.6	Auxin response factor ancillary domain
`XP_057766076.1`	Pfam	`PF02309`	AUX_IAA	Family	856	899	7.8e-11	42.9	AUX/IAA family
`XP_057766077.1`	Pfam	`PF02362`	B3	Domain	146	247	6.2e-22	78.2	B3 DNA binding domain
`XP_057766077.1`	Pfam	`PF06507`	ARF_AD	Domain	295	377	5.5e-34	116.6	Auxin response factor ancillary domain
`XP_057766077.1`	Pfam	`PF02309`	AUX_IAA	Family	856	899	7.8e-11	42.9	AUX/IAA family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057910094.1
TAAAATACTAAAAAAATGGTACCTACATTCTTACATTCTTTCTAGTACATGGGAGTAGTTTATGGGTGCAAGCAAAGGTTGTCTGATTTTCTCTGCAAATTTCTGTTTCTCATTTCTTCAGCTCACAAAACGGAACCAACTATTTTCAGCAAGTTTATGCGCAGCTTAAGAGTAATCACACTCTTTGCCAGTTTTGAGGCAATCCCTTGAAATAACATGTAGCGAGAAACTCGAGAACAGTGAACGAGATGGAATAATGT...

XM_057910093.1
CATTCTTTCTAGTACATGGGAGTAGTTTATGGGTGCAAGCAAAGGTTGTCTGATTTTCTCTGCAAATTTCTGTTTCTCATTTCTTCAGCTCACAAAACGGAACCAACTATTTTCAGCAAGTTTATGCGCAGCTTAAGAGTAATCACACTCTTTGCCAGTTTTGAGGCAATCCCTTGAAATAACATGTAGCGAGAAACTCGAGAACAGTGAACGAGATGGAATAATGTTATTGTTAAAGGAGAGAGAGAGGAGAGAGAAGG...

CDS

2 records

下载 CDS FASTA

LOC130986633
ATGGTTTCTGTTGAAGAAAAGCTGAAGCCTGGAGGTTTGGTGAGTGGGGGAAGCAATCTAATTGATGGCATGAAACTGTTGAAAGAAATGCAGGATCACACTGGGGTAAAGAAAGCGATAAATTCTGAGCTGTGGCATGCTTGTGCTGGTCCACTGGTCACCTTGCCTCAGGTGGGAAGCCTTGTATACTACTTCCCACAAGGGCATAGCGAGCAGGTTGCCGTTTCCACGAATAGATCAGCAACGACACAAATACCGAA...

Protein

2 records

下载 Protein FASTA

XP_057766076.1
MVSVEEKLKPGGLVSGGSNLIDGMKLLKEMQDHTGVKKAINSELWHACAGPLVTLPQVGSLVYYFPQGHSEQVAVSTNRSATTQIPNYPNLPTQLLCQVHNVTLHADKETDEIYAQMSLQCVNTEKDVFPIPDFGLKPSKHPTEFFCKTLTASDTSTHGGFSVPRRAAEKLFPQLDYSMQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSMFVGAKRLRAGDAVLFIRDEKSQLLLGVRRANRQQTTLPSSVLS...

XP_057766077.1
MVSVEEKLKPGGLVSGGSNLIDGMKLLKEMQDHTGVKKAINSELWHACAGPLVTLPQVGSLVYYFPQGHSEQVAVSTNRSATTQIPNYPNLPTQLLCQVHNVTLHADKETDEIYAQMSLQCVNTEKDVFPIPDFGLKPSKHPTEFFCKTLTASDTSTHGGFSVPRRAAEKLFPQLDYSMQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSMFVGAKRLRAGDAVLFIRDEKSQLLLGVRRANRQQTTLPSSVLS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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