当前解析结果
SmilChr05G002004| 统一新 Gene ID | SmilChr05G002004 |
|---|---|
| 名称 | SmilChr05G002004 |
| 描述 | tubulin beta chain-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 20747689 - 20749456 / - |
| NCBI Gene ID | LOC130986649 |
|---|---|
| GeneID | 130986649 |
| locus_tag | - |
| NCBI Name | LOC130986649 |
| 原始查询 | LOC130986649 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | tubulin beta chain-like |
| 产物 | tubulin beta chain-like |
| Arabidopsis | AT1G75780 (TUB1)tubulin beta-1 chain [Source:NCBI gene (formerly Entrezgene);Acc:843911] identity=92.8; qcov=0.964; evalue=0; confidence=high |
| Rice | Os06g0671900 (OsTUB3)- identity=93; qcov=0.962; evalue=0; confidence=high |
| GO | GO:0000226 (microtubule cytoskeleton organization); GO:0000278 (mitotic cell cycle); GO:0003924 (GTPase activity); GO:0005200 (structural constituent of cytoskeleton); GO:0005525 (GTP binding); GO:0005737 (cytoplasm); GO:0005874 (microtubule) |
| KEGG | smil04145 (Phagocytosis - Salvia miltiorrhiza (redroot sage)); smil04517 (IgSF CAM signaling - Salvia miltiorrhiza (redroot sage)); smil04814 (Motor proteins - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00091 (Tubulin); PF03953 (Tubulin_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986649 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 0.80000 | XP_057766095.1 |
| 2 | Spindle | Spindle | 0.40000 | XP_057766095.1 |
| 3 | Spindle pole | Spindle pole | 0.40000 | XP_057766095.1 |
| 4 | Centrosome | 中心体 | 0.20000 | XP_057766095.1 |
| 5 | Cytoplasm | 细胞质 | 0.20000 | XP_057766095.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:20747892 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C24 |
Chr5:20747961 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B101,C12 |
Chr5:20747990 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B83,C10,C52 |
Chr5:20748015 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B101,C12 |
Chr5:20748036 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C45,C61,C85 |
Chr5:20748045 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B108,B27 |
Chr5:20748096 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C45,C61 |
Chr5:20748120 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B107,B13,C28,C86,D4 |
Chr5:20748165 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B57,B62,C32,C34,C68 |
Chr5:20748182 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C45,C61,C85 |
Chr5:20748213 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C45,C61,C85 |
Chr5:20748215 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B20 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057766095.1PF00091
Tubulin 3-211 aa
PF03953
Tubulin_C 261-382 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057766095.1 |
Pfam | PF00091 |
Tubulin | Domain | 3 | 211 | 1.5e-64 | 218.6 | Tubulin/FtsZ family, GTPase domain |
XP_057766095.1 |
Pfam | PF03953 |
Tubulin_C | Domain | 261 | 382 | 3.3e-38 | 131.4 | Tubulin C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。