当前解析结果
SmilChr05G002011| 统一新 Gene ID | SmilChr05G002011 |
|---|---|
| 名称 | SmilChr05G002011 |
| 描述 | endoplasmin homolog |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 20814832 - 20820058 / - |
| NCBI Gene ID | LOC130986651 |
|---|---|
| GeneID | 130986651 |
| locus_tag | - |
| NCBI Name | LOC130986651 |
| 原始查询 | LOC130986651 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | endoplasmin homolog |
| 产物 | endoplasmin homolog |
| Arabidopsis | AT4G24190 (SHD)Chaperone protein htpG family protein [Source:NCBI gene (formerly Entrezgene);Acc:828520] identity=84.7; qcov=0.949; evalue=0; confidence=high |
| Rice | Os06g0716700 (GRP94)- identity=83.9; qcov=0.926; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0006457 (protein folding); GO:0016887 (ATP hydrolysis activity); GO:0051082 (GO:0051082); GO:0140662 (ATP-dependent protein folding chaperone) |
| KEGG | smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00183 (HSP90); PF02518 (HATPase_c); PF13589 (HATPase_c_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986651 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057766097.1 |
| 2 | Endoplasmic reticulum lumen | 内质网腔 | 1.00000 | XP_057766097.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057766097.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:20815036 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B37,C32,C47,C68,C79 |
Chr5:20815100 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C38 |
Chr5:20815276 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr5:20815583 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B136 |
Chr5:20815938 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B108,C24 |
Chr5:20816738 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C45,C61,C85 |
Chr5:20817326 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | D11,D6 |
Chr5:20818311 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B57,C24,C32,C68 |
Chr5:20818457 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr5:20819240 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr5:20819324 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057766097.1PF02518
HATPase_c 104-255 aa
PF13589
HATPase_c_3 105-221 aa
PF00183
HSP90 259-800 aa
XP_057766098.1PF02518
HATPase_c 104-255 aa
PF13589
HATPase_c_3 105-221 aa
PF00183
HSP90 259-799 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057766097.1 |
Pfam | PF02518 |
HATPase_c | Domain | 104 | 255 | 2.6e-07 | 31.8 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
XP_057766097.1 |
Pfam | PF13589 |
HATPase_c_3 | Domain | 105 | 221 | 2.5e-08 | 34.8 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
XP_057766097.1 |
Pfam | PF00183 |
HSP90 | Family | 259 | 800 | 2.1e-215 | 717.3 | Hsp90 protein |
XP_057766098.1 |
Pfam | PF02518 |
HATPase_c | Domain | 104 | 255 | 2.6e-07 | 31.8 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
XP_057766098.1 |
Pfam | PF13589 |
HATPase_c_3 | Domain | 105 | 221 | 2.5e-08 | 34.8 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
XP_057766098.1 |
Pfam | PF00183 |
HSP90 | Family | 259 | 799 | 2.4e-215 | 717.1 | Hsp90 protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。