Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002014`

染色体: Chr05 坐标: 20896865-20900524 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002014`
名称	SmilChr05G002014
描述	uncharacterized SmilChr05G002014
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	20896865 - 20900524 / `-`

ID 对照

NCBI Gene ID	`LOC130986656`
GeneID	`130986656`
locus_tag	`-`
NCBI Name	`LOC130986656`
原始查询	`LOC130986656`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	TFIIB zinc-binding protein [Source:NCBI gene (formerly Entrezgene);Acc:822191]; symbol=AT3G25940; hit=AT3G25940; species=arabidopsis; confidence=medium
产物	TFIIB zinc-binding protein [Source:NCBI gene (formerly Entrezgene);Acc:822191]; symbol=AT3G25940; hit=AT3G25940; species=arabidopsis; confidence=medium
Arabidopsis	`AT3G25940` (AT3G25940) TFIIB zinc-binding protein [Source:NCBI gene (formerly Entrezgene);Acc:822191] identity=50.4; qcov=0.959; evalue=6.43e-37; confidence=medium
Rice	`Os03g0711700` (OSJNBb0033N16.2) - identity=41.6; qcov=1.02; evalue=1.45e-30; confidence=medium
GO	GO:0003676 (nucleic acid binding); GO:0003899 (DNA-directed RNA polymerase activity); GO:0005736 (RNA polymerase I complex); GO:0006351 (DNA-templated transcription); GO:0006363 (termination of RNA polymerase I transcription); GO:0008270 (zinc ion binding)
KEGG	smil03020 (RNA polymerase - Salvia miltiorrhiza (redroot sage))
Pfam	PF01096 (Zn_ribbon_TFIIS)
InterPro	-
eggNOG	-
NR	GeneID:130986656

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057766104.1`
2	Nucleus	细胞核	1.00000	`XP_057766106.1`
3	Nucleoplasm	核质	0.60000	`XP_057766106.1`
4	Cytosol	细胞质基质	0.60000	`XP_057766106.1`
5	Cell projection	细胞突起	0.20000	`XP_057766106.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:20897134`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A2,A21,A6,B82,C78
`Chr5:20897268`	`GAT`	`G`	2bp_deletion	frameshift_variant	64	A10,A16,A3,A6,A8,B1,B103,B104,B108,B111,B117,B12,B120,B124,B125,B128,B130,B132,B136,B137,B138,B140,B18,B19,B2,B22,B23,B26,B32,B34,B35,B46,B54,B56,B61,B70,B74,B79,B8,B96,C12,C18,C32,C33,C37,C39,C40,C44,C47,C49,C55,C56,C65,C68,C71,C72,C74,C79,C82,C86,D10,D5,D7,D8
`Chr5:20897328`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A2,A21,A6,B82,C78
`Chr5:20897362`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A16,B21,B59,B89,D11
`Chr5:20897489`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B38,B39,B65
`Chr5:20898170`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:20898902`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A4,B1,B102,B68,C60

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766104.1

162 aa

162

Zn_ribbon_TFIIS

PF01096 Zn_ribbon_TFIIS 135-157 aa

XP_057766105.1

162 aa

162

Zn_ribbon_TFIIS

PF01096 Zn_ribbon_TFIIS 135-157 aa

XP_057766106.1

122 aa

122

Zn_ribbon_TFIIS

PF01096 Zn_ribbon_TFIIS 81-117 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766104.1`	Pfam	`PF01096`	Zn_ribbon_TFIIS	Domain	135	157	1.5e-08	35.0	Transcription factor S-II (TFIIS)
`XP_057766105.1`	Pfam	`PF01096`	Zn_ribbon_TFIIS	Domain	135	157	1.5e-08	35.0	Transcription factor S-II (TFIIS)
`XP_057766106.1`	Pfam	`PF01096`	Zn_ribbon_TFIIS	Domain	81	117	2e-13	50.6	Transcription factor S-II (TFIIS)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057910122.1
TGTAAAAAAACTAGGGCATCAGAACAGAATTCACGCCTCCCCCACGCCCTCCCCGTCTCCACGCCTCCACGCCCTTCCCGTCTGCCTTGCTCCCTCCGGCGACCAGCGCCTCGTCCCACCGCGCCCATCTCCCTCTGCACTCTCCAGCGCCGCCGCGCCCTTCCTCTCCGACCTGTATTCCCCTCCAGCGCTGCCGCGCCCATCTCCCTCTGCACCCTCCCTTCTCTCTCTCACCTCTCTCTCTCCAACAACTACTTCAA...

XM_057910121.1
TCGGTTTATCGGTTACCGGTTATAAGAATAGGGCTTATTCGGTTCCGGTTAACCGGTTCGGTTAAAACCGAACCGGACCGATTACCAGCCCTAGTGCTTGCCTCTCTCTCTGCAAATTCATCCCCTTTTCTTTGTTTTCTTCCCTCTTTTGATAAACCCTAACCCTAAATCCCTTCTCCCCTCAACCACTGAGCTCTCTTCTTACCACTCTAGATCACTTTTACTCACCCATTTTCATTGGAAAAATCGTGTGTAGAGTG...

CDS

3 records

下载 CDS FASTA

LOC130986656
ATGGCAGATTACTGCCGGCAGCGTGACTTCATGTTCTGCGAATTCTGCGGGACAATGCTCTCTTTCGGTACGCCCAAGTATGCTCGATGCCCCTTGTGCAAATCCCAGAAGCGTCTCAAAGAGATGAAGGGAAAAGTGATCAGCTATACAATCAGTGCTGAGGATTTGAGGAGGGAGTTAGGAGTGTCCACCCTCGAGGATATAGAAGAAGAGAGGGAACTAAAACAGATGGATTACAACGCAAAATGCAAAGCTTGCCA...

Protein

3 records

下载 Protein FASTA

XP_057766104.1
MADYCRQRDFMFCEFCGTMLSFGTPKYARCPLCKSQKRLKEMKGKVISYTISAEDLRRELGVSTLEDIEEERELKQMDYNAKCKACQHLGLAYVARQVNCQLLYLSTYNYLLVVYIAVLVPMSILTSSARWLLRLIQIRSADEGQTIFYSCPVCAHKQTENS

XP_057766105.1
MADYCRQRDFMFCEFCGTMLSFGTPKYARCPLCKSQKRLKEMKGKVISYTISAEDLRRELGVSTLEDIEEERELKQMDYNAKCKACQHLGLAYVARQVNCQLLYLSTYNYLLVVYIAVLVPMSILTSSARWLLRLIQIRSADEGQTIFYSCPVCAHKQTENS

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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