Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002023`

染色体: Chr05 坐标: 20982460-20989708 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002023`
名称	SmilChr05G002023
描述	cellulose synthase A catalytic subunit 5 [UDP-forming]-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	20982460 - 20989708 / `-`

ID 对照

NCBI Gene ID	`LOC130986664`
GeneID	`130986664`
locus_tag	`-`
NCBI Name	`LOC130986664`
原始查询	`LOC130986664`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cellulose synthase A catalytic subunit 5 [UDP-forming]-like
产物	cellulose synthase A catalytic subunit 5 [UDP-forming]-like
Arabidopsis	`AT5G64740` (CESA6) cellulose synthase 6 [Source:NCBI gene (formerly Entrezgene);Acc:836595] identity=79.4; qcov=1; evalue=0; confidence=high
Rice	`Os03g0837100` (OsCesA5) - identity=71.3; qcov=1.01; evalue=0; confidence=high
GO	GO:0005802 (trans-Golgi network); GO:0005886 (plasma membrane); GO:0009833 (plant-type primary cell wall biogenesis); GO:0016760 (cellulose synthase (UDP-forming) activity); GO:0030244 (cellulose biosynthetic process)
KEGG	-
Pfam	PF03552 (Cellulose_synt); PF13632 (Glyco_trans_2_3); PF14569 (zf-UDP)
InterPro	-
eggNOG	-
NR	GeneID:130986664

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057766113.1`
2	Golgi apparatus	高尔基体	0.20000	`XP_057766113.1`
3	Nucleus	细胞核	0.00000	`XP_057766113.1`
4	Chromosome	染色体	0.00000	`XP_057766113.1`
5	Centromere	着丝粒	0.00000	`XP_057766113.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:20982822`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A7,B112,B41,B45,B63
`Chr5:20982927`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B73,C31
`Chr5:20983105`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A22,C86
`Chr5:20983260`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C25
`Chr5:20983643`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	C22,C5,C86,D9
`Chr5:20983786`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B38,B39
`Chr5:20983847`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B78,C23
`Chr5:20983859`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C45,C85
`Chr5:20984033`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:20984619`	`CG`	`C`	1bp_deletion	frameshift_variant	1	B134
`Chr5:20984619`	`CG`	`C`	1bp_deletion	CDS_variant	1	B134
`Chr5:20984625`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B134

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766113.1

1091 aa

546

1091

zf-UDP

Cellulose_synt

Glyco_trans_2_3

PF14569 zf-UDP 31-106 aa PF03552 Cellulose_synt 360-1078 aa PF13632 Glyco_trans_2_3 779-889 aa

XP_057766114.1

1090 aa

545

1090

zf-UDP

Cellulose_synt

Glyco_trans_2_3

PF14569 zf-UDP 31-106 aa PF03552 Cellulose_synt 359-1077 aa PF13632 Glyco_trans_2_3 778-888 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766113.1`	Pfam	`PF14569`	zf-UDP	Domain	31	106	1.6e-35	121.7	Zinc-binding RING-finger
`XP_057766113.1`	Pfam	`PF03552`	Cellulose_synt	Domain	360	1078	0	1342.5	Cellulose synthase
`XP_057766113.1`	Pfam	`PF13632`	Glyco_trans_2_3	Domain	779	889	9.3e-07	29.6	Glycosyl transferase family group 2
`XP_057766114.1`	Pfam	`PF14569`	zf-UDP	Domain	31	106	1.6e-35	121.7	Zinc-binding RING-finger
`XP_057766114.1`	Pfam	`PF03552`	Cellulose_synt	Domain	359	1077	0	1342.5	Cellulose synthase
`XP_057766114.1`	Pfam	`PF13632`	Glyco_trans_2_3	Domain	778	888	9.3e-07	29.6	Glycosyl transferase family group 2

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057910130.1
AATATTAGTATAAAGAATACAAGTCCACCCAAATCTGCACTCCCTCACTCACACACACACACACAGTGACACACGCTCTCTCTTTCTCTCTCTATCTCTATCAATCAAGACTCTAAAAAGTCTATCGGTCCTGTCCAGCTATATTACAGTGCAGCGTTAGCTTGTAAAGAAAAAAACTTTAATTATTTTCATTAATTAATTTCTTCATTTTTAGTTCTATTTGTTTTATCATCACTACATTTCTCAAGGAACACAACCAT...

XM_057910131.1
TTAGTATAAAGAATACAAGTCCACCCAAATCTGCACTCCCTCACTCACACACACACACACAGTGACACACGCTCTCTCTTTCTCTCTCTATCTCTATCAATCAAGACTCTAAAAAGTCTATCGGTCCTGTCCAGCTATATTACAGTGCAGCGTTAGCTTGTAAAGAAAAAAACTTTAATTATTTTCATTAATTAATTTCTTCATTTTTAGTTCTATTTGTTTTATCATCACTACATTTCTCAAGGAACACAACCATACAT...

CDS

2 records

下载 CDS FASTA

LOC130986664
ATGGCGATGAACACAGGAGGGAGGCTTGTTGCTGGTTCACACAATAGAAATGAGTTTGTGCTGATTAATGCTGATGAAATTGGGAGAATTAAGGCTGTTCATGAACTAAGTGGGCAAACATGCCAAATTTGCGGGGATGAAGTGGAGATAATAAATGAGGAACCGTTTGTTGCCTGCAATGAATGCGCTTTCCCCGTCTGTAGAACTTGCTATGAGTATGAGAGAAAAGAGGGAACTCAGGCCTGTCCTCAATGCAAGAC...

Protein

2 records

下载 Protein FASTA

XP_057766113.1
MAMNTGGRLVAGSHNRNEFVLINADEIGRIKAVHELSGQTCQICGDEVEIINEEPFVACNECAFPVCRTCYEYERKEGTQACPQCKTRYKRIKGFARVEGDEDEDDIDDLEYEFDYVKSEPLGFTQNGGAVGSAYGGLAGSATTSGHDSSQGIDIPLLTYGEEDVEISHNQSAIIVPPFASNANGIHATPPGTTAPPVHPRPMVPEKDLAVYGYGSVAWKDRMEEWRRRQNEKLQVVKHQGATGGDFDGGDFGADLPMMD...

XP_057766114.1
MAMNTGGRLVAGSHNRNEFVLINADEIGRIKAVHELSGQTCQICGDEVEIINEEPFVACNECAFPVCRTCYEYERKEGTQACPQCKTRYKRIKGFARVEGDEDEDDIDDLEYEFDYVKSEPLGFTQNGGAVGSAYGGLAGSATTSGHDSSQGIDIPLLTYGEEDVEISHNQSAIIVPPFASNANGIHATPPGTTAPLHPRPMVPEKDLAVYGYGSVAWKDRMEEWRRRQNEKLQVVKHQGATGGDFDGGDFGADLPMMDE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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