当前解析结果
SmilChr05G002087| 统一新 Gene ID | SmilChr05G002087 |
|---|---|
| 名称 | SmilChr05G002087 |
| 描述 | D-2-hydroxyglutarate dehydrogenase, mitochondrial |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 21860499 - 21869548 / + |
| NCBI Gene ID | LOC130986716 |
|---|---|
| GeneID | 130986716 |
| locus_tag | - |
| NCBI Name | LOC130986716 |
| 原始查询 | LOC130986716 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | D-2-hydroxyglutarate dehydrogenase, mitochondrial |
| 产物 | D-2-hydroxyglutarate dehydrogenase%2C mitochondrial |
| Arabidopsis | AT4G36400 (D2HGDH)FAD-linked oxidases family protein [Source:NCBI gene (formerly Entrezgene);Acc:829792] identity=76.9; qcov=0.95; evalue=0; confidence=high |
| Rice | Os07g0187200 (D2HGDH)- identity=73.6; qcov=0.952; evalue=0; confidence=high |
| GO | GO:0003824 (catalytic activity); GO:0005739 (mitochondrion); GO:0071949 (FAD binding) |
| KEGG | - |
| Pfam | PF01565 (FAD_binding_4); PF02913 (FAD-oxidase_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986716 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057766179.1 |
| 2 | Peroxisome | 过氧化物酶体 | 1.00000 | XP_057766183.1 |
| 3 | Mitochondrion matrix | 线粒体基质 | 1.00000 | XP_057766181.1 |
| 4 | Cytoplasm | 细胞质 | 0.40000 | XP_057766183.1 |
| 5 | Cytosol | 细胞质基质 | 0.20000 | XP_057766185.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:21860848 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr5:21861576 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C76 |
Chr5:21861579 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr5:21861654 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr5:21861754 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr5:21861843 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr5:21862715 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B85,B91,C37 |
Chr5:21863464 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr5:21864222 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr5:21864230 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A18,B85,B91,C37 |
Chr5:21866098 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr5:21866104 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057766179.1PF01565
FAD_binding_4 150-285 aa
PF02913
FAD-oxidase_C 326-566 aa
XP_057766180.1PF01565
FAD_binding_4 150-274 aa
PF02913
FAD-oxidase_C 294-534 aa
XP_057766181.1PF01565
FAD_binding_4 108-243 aa
PF02913
FAD-oxidase_C 284-524 aa
XP_057766182.1PF01565
FAD_binding_4 108-232 aa
PF02913
FAD-oxidase_C 252-492 aa
XP_057766183.1PF01565
FAD_binding_4 10-145 aa
PF02913
FAD-oxidase_C 186-426 aa
XP_057766185.1PF01565
FAD_binding_4 23-141 aa
PF02913
FAD-oxidase_C 182-422 aa
XP_057766186.1PF01565
FAD_binding_4 11-140 aa
PF02913
FAD-oxidase_C 181-421 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057766179.1 |
Pfam | PF01565 |
FAD_binding_4 | Domain | 150 | 285 | 2.1e-33 | 115.7 | FAD binding domain |
XP_057766179.1 |
Pfam | PF02913 |
FAD-oxidase_C | Domain | 326 | 566 | 7.3e-59 | 200.2 | FAD linked oxidases, C-terminal domain |
XP_057766180.1 |
Pfam | PF01565 |
FAD_binding_4 | Domain | 150 | 274 | 2.2e-27 | 96.2 | FAD binding domain |
XP_057766180.1 |
Pfam | PF02913 |
FAD-oxidase_C | Domain | 294 | 534 | 6.4e-59 | 200.4 | FAD linked oxidases, C-terminal domain |
XP_057766181.1 |
Pfam | PF01565 |
FAD_binding_4 | Domain | 108 | 243 | 1.8e-33 | 115.9 | FAD binding domain |
XP_057766181.1 |
Pfam | PF02913 |
FAD-oxidase_C | Domain | 284 | 524 | 6.2e-59 | 200.4 | FAD linked oxidases, C-terminal domain |
XP_057766182.1 |
Pfam | PF01565 |
FAD_binding_4 | Domain | 108 | 232 | 1.9e-27 | 96.4 | FAD binding domain |
XP_057766182.1 |
Pfam | PF02913 |
FAD-oxidase_C | Domain | 252 | 492 | 5.3e-59 | 200.6 | FAD linked oxidases, C-terminal domain |
XP_057766183.1 |
Pfam | PF01565 |
FAD_binding_4 | Domain | 10 | 145 | 1.3e-33 | 116.4 | FAD binding domain |
XP_057766183.1 |
Pfam | PF02913 |
FAD-oxidase_C | Domain | 186 | 426 | 4.1e-59 | 201.0 | FAD linked oxidases, C-terminal domain |
XP_057766185.1 |
Pfam | PF01565 |
FAD_binding_4 | Domain | 23 | 141 | 3.5e-27 | 95.5 | FAD binding domain |
XP_057766185.1 |
Pfam | PF02913 |
FAD-oxidase_C | Domain | 182 | 422 | 4e-59 | 201.0 | FAD linked oxidases, C-terminal domain |
XP_057766186.1 |
Pfam | PF01565 |
FAD_binding_4 | Domain | 11 | 140 | 5.4e-31 | 107.9 | FAD binding domain |
XP_057766186.1 |
Pfam | PF02913 |
FAD-oxidase_C | Domain | 181 | 421 | 4e-59 | 201.0 | FAD linked oxidases, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
7 records
下载 cDNA FASTA7 records
下载 CDS FASTA7 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。