Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G002119

染色体: Chr05 坐标: 22259667-22269584 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G002119
名称SmilChr05G002119
描述uncharacterized SmilChr05G002119
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向22259667 - 22269584 / +

ID 对照

NCBI Gene IDLOC130986742
GeneID130986742
locus_tag-
NCBI NameLOC130986742
原始查询LOC130986742

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述myb-like protein X [Source:NCBI gene (formerly Entrezgene);Acc:834369]; symbol=AT5G43490; hit=AT5G43490; species=arabidopsis; confidence=low
产物myb-like protein X [Source:NCBI gene (formerly Entrezgene);Acc:834369]; symbol=AT5G43490; hit=AT5G43490; species=arabidopsis; confidence=low
ArabidopsisAT5G43490 (AT5G43490)
myb-like protein X [Source:NCBI gene (formerly Entrezgene);Acc:834369]
identity=32.6; qcov=0.341; evalue=4.86e-16; confidence=low
Rice-
-
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130986742

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057766229.1
2 Chromosome 染色体 0.00000 XP_057766229.1
3 Centromere 着丝粒 0.00000 XP_057766229.1
4 Chromatin 染色质 0.00000 XP_057766229.1
5 Telomere 端粒 0.00000 XP_057766229.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:22267623 G A EMS_canonical_SNV CDS_variant 5 A1,B20,B75,C58,C74
Chr5:22267909 C T EMS_canonical_SNV CDS_variant 2 A8,B10
Chr5:22268563 G A EMS_canonical_SNV CDS_variant 5 B128,B25,B30,C36,C75
Chr5:22268675 C T EMS_canonical_SNV CDS_variant 1 A22
Chr5:22268943 G A EMS_canonical_SNV CDS_variant 3 A21,C35,C38

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057910247.1
GAAAAAAGAAACATGTATTTATATACTCTCTTCTCTCTCCTCTCCCCCTAAAATCACTACTGCTAATGAGTACGCTTTGGTATTTGTTTTTCCTTTCCTGATTTTTCCCCATTTCGCGTTGTATTCCCCAACACCAAAATAAACCTCTGTCTCTCCCAATTTTTTCTTCCACACACTCAGCCAGCATAAACCTATACAACGTATCCATCGCTGTTTCCCCATATTTATTCATCGAGGGAAGAGGAAATTTATTGCTTGTT...
XM_057910246.1
GAAAAAAGAAACATGTATTTATATACTCTCTTCTCTCTCCTCTCCCCCTAAAATCACTACTGCTAATGAGTACGCTTTGGTATTTGTTTTTCCTTTCCTGATTTTTCCCCATTTCGCGTTGTATTCCCCAACACCAAAATAAACCTCTGTCTCTCCCAATTTTTTCTTCCACACACTCAGCCAGCATAAACCTATACAACGTATCCATCGCTGTTTCCCCATATTTATTCATCGAGGGAAGAGGAAATTTATTGCTTGTT...

CDS

3 records

下载 CDS FASTA
LOC130986742
ATGTCTCGCTGCTTTCCATTTCCACCACCAGGATATGAAAGAAAGCACAGCACCTGCGACTTGGACTTATTGAAAGAGGCAAAGCGCAAAGAGAAAAAGCACAAAAAGGAGAAAAAGGATAAGGAAAGAAAGAAAGATAAAGATAAAGAGAGAGAGAAAGAGAAAGATGGAAGTGATGAGAAACATAGGGACAAGAAAGATCGAAAAGAAAAACACAAGGACAAGAAGGAAAAGCACAAGGACAAGAAGGAAAAGCACAA...
LOC130986742
ATGTCTCGCTGCTTTCCATTTCCACCACCAGGATATGAAAGAAAGCACAGCACCTGCGACTTGGACTTATTGAAAGAGGCAAAGCGCAAAGAGAAAAAGCACAAAAAGGAGAAAAAGGATAAGGAAAGAAAGAAAGATAAAGATAAAGAGAGAGAGAAAGAGAAAGATGGAAGTGATGAGAAACATAGGGACAAGAAAGATCGAAAAGAAAAACACAAGGACAAGAAGGAAAAGCACAAGGACAAGAAGGAAAAGCACAA...

Protein

3 records

下载 Protein FASTA
XP_057766229.1
MSRCFPFPPPGYERKHSTCDLDLLKEAKRKEKKHKKEKKDKERKKDKDKEREKEKDGSDEKHRDKKDRKEKHKDKKEKHKDKKEKHKDKRKDKEDRGKDKDKSSISEESTVAGKLEDRSGGKLQPKVHSKDRSGFGNEATSSSPFQGQNGGKPSQSCLPSQFSEESKFLQELDRRIRDDQRGGGSQLPERVAVLDNKDQEMVSRGAITNSSGLLVEEKGDNKNKRTDRKNGPQGLKNDFSGSKMVQSLVPNTKAKVEGVP...
XP_057766230.1
MSRCFPFPPPGYERKHSTCDLDLLKEAKRKEKKHKKEKKDKERKKDKDKEREKEKDGSDEKHRDKKDRKEKHKDKKEKHKDKKEKHKDKRKDKEDRGKDKDKSSISEESTVAGKLEDRSGGKLQPKVHSKDRSGFGNEATSSSPFQGQNGGKPSQSCLPSQFSEESKFLQELDRRIRDDQRGGGSQLPERVAVLDNKDQEMVSRGAITNSSGLLVEEKGDNKNKRTDRKNGPQGLKNDFSGSKMVQSLVPNTKAKVEGVP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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