当前解析结果
SmilChr05G002146| 统一新 Gene ID | SmilChr05G002146 |
|---|---|
| 名称 | SmilChr05G002146 |
| 描述 | beta-galactosidase 9 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 22631583 - 22654065 / + |
| NCBI Gene ID | LOC130986762 |
|---|---|
| GeneID | 130986762 |
| locus_tag | - |
| NCBI Name | LOC130986762 |
| 原始查询 | LOC130986762 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | beta-galactosidase 9 |
| 产物 | beta-galactosidase 9 |
| Arabidopsis | AT2G32810 (BGAL9)beta galactosidase 9 [Source:NCBI gene (formerly Entrezgene);Acc:817842] identity=65; qcov=1.01; evalue=0; confidence=high |
| Rice | Os12g0429200 (OsBgal13)- identity=60.7; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0004565 (beta-galactosidase activity); GO:0005618 (cell wall); GO:0005773 (vacuole); GO:0005975 (carbohydrate metabolic process); GO:0030246 (carbohydrate binding) |
| KEGG | - |
| Pfam | PF01301 (Glyco_hydro_35); PF02140 (SUEL_Lectin); PF17834 (GHD); PF21467 (BetaGal_gal-bd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986762 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057766260.1 |
| 2 | Vacuole | 液泡 | 0.80000 | XP_057766258.1 |
| 3 | Cell wall | 细胞壁 | 0.40000 | XP_057766258.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057766261.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057766261.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:22631951 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B35 |
Chr5:22631951 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B35 |
Chr5:22632017 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
Chr5:22633848 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A3,B115,B64 |
Chr5:22637476 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B128,B25,B30,C36,C75 |
Chr5:22642436 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B121,C4 |
Chr5:22642512 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C24 |
Chr5:22644685 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,D11 |
Chr5:22652679 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr5:22653004 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B26,B61,B8 |
Chr5:22653083 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | C27 |
Chr5:22653083 |
CT |
C |
1bp_deletion | CDS_variant | 1 | C27 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057766258.1PF01301
Glyco_hydro_35 36-340 aa
PF17834
GHD 364-420 aa
PF21467
BetaGal_gal-bd 639-724 aa
PF02140
SUEL_Lectin 785-862 aa
XP_057766259.1PF01301
Glyco_hydro_35 36-340 aa
PF21467
BetaGal_gal-bd 609-694 aa
PF02140
SUEL_Lectin 755-832 aa
XP_057766260.1PF01301
Glyco_hydro_35 1-282 aa
PF17834
GHD 306-362 aa
PF21467
BetaGal_gal-bd 581-666 aa
PF02140
SUEL_Lectin 727-804 aa
XP_057766261.1PF01301
Glyco_hydro_35 1-188 aa
PF17834
GHD 212-268 aa
PF21467
BetaGal_gal-bd 487-572 aa
PF02140
SUEL_Lectin 633-710 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057766258.1 |
Pfam | PF01301 |
Glyco_hydro_35 | Domain | 36 | 340 | 1.7e-118 | 396.6 | Glycosyl hydrolases family 35 |
XP_057766258.1 |
Pfam | PF17834 |
GHD | Domain | 364 | 420 | 2.4e-24 | 85.5 | Beta-sandwich domain in beta galactosidase |
XP_057766258.1 |
Pfam | PF21467 |
BetaGal_gal-bd | Domain | 639 | 724 | 4.5e-27 | 94.7 | Beta-galactosidase, galactose-binding domain |
XP_057766258.1 |
Pfam | PF02140 |
SUEL_Lectin | Domain | 785 | 862 | 5e-23 | 82.0 | D-galactoside/L-rhamnose binding SUEL lectin domain |
XP_057766259.1 |
Pfam | PF01301 |
Glyco_hydro_35 | Domain | 36 | 340 | 1.6e-118 | 396.7 | Glycosyl hydrolases family 35 |
XP_057766259.1 |
Pfam | PF21467 |
BetaGal_gal-bd | Domain | 609 | 694 | 4.1e-27 | 94.8 | Beta-galactosidase, galactose-binding domain |
XP_057766259.1 |
Pfam | PF02140 |
SUEL_Lectin | Domain | 755 | 832 | 4.7e-23 | 82.1 | D-galactoside/L-rhamnose binding SUEL lectin domain |
XP_057766260.1 |
Pfam | PF01301 |
Glyco_hydro_35 | Domain | 1 | 282 | 5.1e-106 | 355.6 | Glycosyl hydrolases family 35 |
XP_057766260.1 |
Pfam | PF17834 |
GHD | Domain | 306 | 362 | 2.2e-24 | 85.6 | Beta-sandwich domain in beta galactosidase |
XP_057766260.1 |
Pfam | PF21467 |
BetaGal_gal-bd | Domain | 581 | 666 | 3.7e-27 | 95.0 | Beta-galactosidase, galactose-binding domain |
XP_057766260.1 |
Pfam | PF02140 |
SUEL_Lectin | Domain | 727 | 804 | 4.4e-23 | 82.2 | D-galactoside/L-rhamnose binding SUEL lectin domain |
XP_057766261.1 |
Pfam | PF01301 |
Glyco_hydro_35 | Domain | 1 | 188 | 1.5e-57 | 196.3 | Glycosyl hydrolases family 35 |
XP_057766261.1 |
Pfam | PF17834 |
GHD | Domain | 212 | 268 | 1.9e-24 | 85.8 | Beta-sandwich domain in beta galactosidase |
XP_057766261.1 |
Pfam | PF21467 |
BetaGal_gal-bd | Domain | 487 | 572 | 2.6e-27 | 95.4 | Beta-galactosidase, galactose-binding domain |
XP_057766261.1 |
Pfam | PF02140 |
SUEL_Lectin | Domain | 633 | 710 | 3.5e-23 | 82.5 | D-galactoside/L-rhamnose binding SUEL lectin domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。