Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002169`

染色体: Chr05 坐标: 23017583-23023623 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002169`
名称	SmilChr05G002169
描述	probable sucrose-phosphate synthase 2
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	23017583 - 23023623 / `+`

ID 对照

NCBI Gene ID	`LOC130986765`
GeneID	`130986765`
locus_tag	`-`
NCBI Name	`LOC130986765`
原始查询	`LOC130986765`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable sucrose-phosphate synthase 2
产物	probable sucrose-phosphate synthase 2
Arabidopsis	`AT1G04920` (SPS3F) sucrose phosphate synthase 3F [Source:NCBI gene (formerly Entrezgene);Acc:839382] identity=76; qcov=1.01; evalue=0; confidence=high
Rice	`Os01g0919400` (SPS1) - identity=67.6; qcov=1.03; evalue=0; confidence=high
GO	GO:0005985 (sucrose metabolic process); GO:0016157 (sucrose synthase activity); GO:0046524 (sucrose-phosphate synthase activity)
KEGG	smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00534 (Glycos_transf_1); PF00862 (GT-B_Sucrose_synth); PF05116 (S6PP); PF13692 (Glyco_trans_1_4)
InterPro	-
eggNOG	-
NR	GeneID:130986765

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057766264.1`
2	Cytoplasm	细胞质	0.40000	`XP_057766264.1`
3	Nucleus	细胞核	0.00000	`XP_057766264.1`
4	Chromosome	染色体	0.00000	`XP_057766264.1`
5	Centromere	着丝粒	0.00000	`XP_057766264.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:23018069`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B37,C3,C32,C62,C68
`Chr5:23019078`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C36
`Chr5:23019602`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr5:23019687`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C62
`Chr5:23019779`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B37,C3,C32,C68
`Chr5:23019780`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B113,D5
`Chr5:23019856`	`AC`	`A`	1bp_deletion	frameshift_variant	1	C62
`Chr5:23019856`	`AC`	`A`	1bp_deletion	CDS_variant	1	C62
`Chr5:23020020`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	C84
`Chr5:23020020`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C84
`Chr5:23020094`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr5:23020294`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B12,B13,B44,C8,D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766264.1

1062 aa

531

1062

GT-B_Sucrose_synth

Glycos_transf_1

Glyco_trans_1_4

S6PP

PF00862 GT-B_Sucrose_synth 170-435 aa PF00534 Glycos_transf_1 476-648 aa PF13692 Glyco_trans_1_4 480-636 aa PF05116 S6PP 806-1007 aa

XP_057766265.1

970 aa

485

970

GT-B_Sucrose_synth

Glycos_transf_1

Glyco_trans_1_4

S6PP

PF00862 GT-B_Sucrose_synth 170-435 aa PF00534 Glycos_transf_1 476-648 aa PF13692 Glyco_trans_1_4 480-636 aa PF05116 S6PP 806-968 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766264.1`	Pfam	`PF00862`	GT-B_Sucrose_synth	Domain	170	435	1.4e-12	47.8	Sucrose synthase first GT-B domain
`XP_057766264.1`	Pfam	`PF00534`	Glycos_transf_1	Domain	476	648	1e-22	81.2	Glycosyl transferases group 1
`XP_057766264.1`	Pfam	`PF13692`	Glyco_trans_1_4	Domain	480	636	4.8e-15	56.8	Glycosyl transferases group 1
`XP_057766264.1`	Pfam	`PF05116`	S6PP	Family	806	1007	1.3e-14	55.1	Sucrose-6F-phosphate phosphohydrolase
`XP_057766265.1`	Pfam	`PF00862`	GT-B_Sucrose_synth	Domain	170	435	1.1e-12	48.1	Sucrose synthase first GT-B domain
`XP_057766265.1`	Pfam	`PF00534`	Glycos_transf_1	Domain	476	648	9.6e-23	81.3	Glycosyl transferases group 1
`XP_057766265.1`	Pfam	`PF13692`	Glyco_trans_1_4	Domain	480	636	4.4e-15	56.9	Glycosyl transferases group 1
`XP_057766265.1`	Pfam	`PF05116`	S6PP	Family	806	968	3.8e-08	34.0	Sucrose-6F-phosphate phosphohydrolase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057910282.1
TCTCCATTCTCCTTTGCCAAAATTCACACCCACACACATCACCTTATGTGATTTCACATGCCACTGCACATCTCCATCAACATCAACTCACCCTCCTCTCTCCCTCACTAGAATTACATGTTGGAAGAAATGAAAACCAGCAACCAAAAGAAGCGCAACCGAAAAGCCAACACCACCTCCTTGCATGTGAACTCCCTCCTTTTCCTTTAAACCACATTCATTCTCAACCTTAAATCTCCAAACCAAACATCTCTTTCCTC...

XM_057910281.1
TCTCCTTTGCCAAAATTCACACCCACACACATCACCTTATGTGATTTCACATGCCACTGCACATCTCCATCAACATCAACTCACCCTCCTCTCTCCCTCACTAGAATTACATGTTGGAAGAAATGAAAACCAGCAACCAAAAGAAGCGCAACCGAAAAGCCAACACCACCTCCTTGCATGTGAACTCCCTCCTTTTCCTTTAAACCACATTCATTCTCAACCTTAAATCTCCAAACCAAACATCTCTTTCCTCGTTGCCA...

CDS

2 records

下载 CDS FASTA

LOC130986765
ATGGCCGGAAACGAGTGGATAAACGGCTATCTGGAGGCGATATTGGACAGCGGGGCGTCGGCGATAGAGGACCACAAGCCGGCGCCGGCGGTGAGCGTCAGCGTCAGCGACAGAGACAATTTCAATCCCACCAAATACTTCGTGGAGGAAGTCGTGAGCGGCGTCGACGAGAGCGACCTCCACCGCACATGGATCAAGGTCGTCGCCACTAGGAACACCAGGGAGCGAAGCTCTCGCCTCGAGAACATGTGCTGGCGCAT...

Protein

2 records

下载 Protein FASTA

XP_057766264.1
MAGNEWINGYLEAILDSGASAIEDHKPAPAVSVSVSDRDNFNPTKYFVEEVVSGVDESDLHRTWIKVVATRNTRERSSRLENMCWRIWHLARKKKQLEWEDVQRVAHRKWEREQGRKDVTDDMSEDLSEGEKGEVIGEPVKLDSPPRHHLDRNFSTVEVWSDNNKEKKLYIVLISLHGLVRGENMELGRDSDTGGQIKYVVELARALAKMPGVYRVDLFTRQVLSPEVDWSYGEPTEMLSTGPEDANLGESSGAYIVRIP...

XP_057766265.1
MAGNEWINGYLEAILDSGASAIEDHKPAPAVSVSVSDRDNFNPTKYFVEEVVSGVDESDLHRTWIKVVATRNTRERSSRLENMCWRIWHLARKKKQLEWEDVQRVAHRKWEREQGRKDVTDDMSEDLSEGEKGEVIGEPVKLDSPPRHHLDRNFSTVEVWSDNNKEKKLYIVLISLHGLVRGENMELGRDSDTGGQIKYVVELARALAKMPGVYRVDLFTRQVLSPEVDWSYGEPTEMLSTGPEDANLGESSGAYIVRIP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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