当前解析结果
SmilChr05G002158| 统一新 Gene ID | SmilChr05G002158 |
|---|---|
| 名称 | SmilChr05G002158 |
| 描述 | tau-cadinol synthase-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 22826000 - 22831103 / + |
| NCBI Gene ID | LOC130986770 |
|---|---|
| GeneID | 130986770 |
| locus_tag | - |
| NCBI Name | LOC130986770 |
| 原始查询 | LOC130986770 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | tau-cadinol synthase-like |
| 产物 | tau-cadinol synthase-like |
| Arabidopsis | AT5G23960 (TPS21)terpene synthase 21 [Source:NCBI gene (formerly Entrezgene);Acc:832461] identity=33.1; qcov=0.995; evalue=1.13e-102; confidence=low |
| Rice | Os08g0139700 (OsTPS29)- identity=35.9; qcov=0.967; evalue=1.08e-99; confidence=medium |
| GO | GO:0000287 (magnesium ion binding); GO:0010333 (terpene synthase activity); GO:0016102 (diterpenoid biosynthetic process) |
| KEGG | smil00909 (Sesquiterpenoid and triterpenoid biosynthesis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01397 (Terpene_synth); PF03936 (Terpene_synth_C); PF19086 (Terpene_syn_C_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986770 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.60000 | XP_057766270.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057766270.1 |
| 3 | Chloroplast | 叶绿体 | 0.20000 | XP_057766270.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057766270.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057766270.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:22826510 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr5:22826577 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A21,C35,C38,C8 |
Chr5:22826605 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B34,C79 |
Chr5:22828687 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | C18,C29,C6,D2 |
Chr5:22829007 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B103,B96,C42,C9 |
Chr5:22829023 |
A |
AT |
1bp_insertion | frameshift_variant | 7 | B103,B31,B96,C42,C71,C81,C9 |
Chr5:22829647 |
G |
GA |
1bp_insertion | frameshift_variant | 2 | B51,B78 |
Chr5:22829647 |
G |
GA |
1bp_insertion | CDS_variant | 2 | B51,B78 |
Chr5:22829988 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A20,B133,C15 |
Chr5:22830522 |
A |
AGC |
2bp_insertion | frameshift_variant | 1 | B140 |
Chr5:22830522 |
A |
AGC |
2bp_insertion | CDS_variant | 1 | B140 |
Chr5:22830649 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B24,C82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057766270.1PF01397
Terpene_synth 28-194 aa
PF03936
Terpene_synth_C 253-489 aa
PF19086
Terpene_syn_C_2 291-489 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057766270.1 |
Pfam | PF01397 |
Terpene_synth | Repeat | 28 | 194 | 6.1e-44 | 150.7 | Terpene synthase, N-terminal domain |
XP_057766270.1 |
Pfam | PF03936 |
Terpene_synth_C | Domain | 253 | 489 | 4.7e-76 | 256.0 | Terpene synthase family, metal binding domain |
XP_057766270.1 |
Pfam | PF19086 |
Terpene_syn_C_2 | Domain | 291 | 489 | 7.4e-42 | 144.1 | Terpene synthase family 2, C-terminal metal binding |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。