Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002165`

染色体: Chr05 坐标: 22905228-22911133 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002165`
名称	SmilChr05G002165
描述	gamma-cadinene synthase-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	22905228 - 22911133 / `-`

ID 对照

NCBI Gene ID	`LOC130986771`
GeneID	`130986771`
locus_tag	`-`
NCBI Name	`LOC130986771`
原始查询	`LOC130986771`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	gamma-cadinene synthase-like
产物	gamma-cadinene synthase-like
Arabidopsis	`AT1G70080` (AT1G70080) Terpenoid cyclases/Protein prenyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843344] identity=32.6; qcov=1.02; evalue=1.04e-100; confidence=low
Rice	`Os08g0139700` (OsTPS29) - identity=34.1; qcov=0.982; evalue=9.05e-99; confidence=low
GO	GO:0000287 (magnesium ion binding); GO:0010333 (terpene synthase activity); GO:0016102 (diterpenoid biosynthetic process)
KEGG	smil00909 (Sesquiterpenoid and triterpenoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF01397 (Terpene_synth); PF03936 (Terpene_synth_C); PF19086 (Terpene_syn_C_2)
InterPro	-
eggNOG	-
NR	GeneID:130986771

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.60000	`XP_057766271.1`
2	Cytosol	细胞质基质	0.60000	`XP_057766271.1`
3	Chloroplast	叶绿体	0.20000	`XP_057766271.1`
4	Nucleus	细胞核	0.00000	`XP_057766271.1`
5	Chromosome	染色体	0.00000	`XP_057766271.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:22905571`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A7
`Chr5:22906340`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B105
`Chr5:22906376`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C44
`Chr5:22908751`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A7,C31
`Chr5:22908788`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A7
`Chr5:22909644`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr5:22909751`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A20,B133,B69,B9,C15
`Chr5:22909881`	`ATC`	`A`	2bp_deletion	frameshift_variant	50	A13,A15,A18,A20,A25,B108,B11,B114,B120,B126,B129,B13,B14,B140,B17,B19,B25,B3,B31,B40,B44,B52,B6,B62,B63,B72,B78,B80,B81,B82,B95,C1,C10,C12,C14,C15,C2,C3,C30,C50,C51,C6,C63,C67,C70,C73,C79,C80,C85,D1
`Chr5:22911012`	`AC`	`A`	1bp_deletion	frameshift_variant	48	A13,A15,A18,A20,A25,B108,B11,B114,B126,B129,B13,B140,B17,B19,B24,B3,B31,B4,B40,B44,B51,B52,B62,B63,B72,B80,B81,B82,C1,C10,C12,C14,C15,C2,C3,C30,C50,C51,C6,C63,C67,C7,C70,C73,C79,C85,D1,D9
`Chr5:22911014`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B79

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766271.1

546 aa

273

546

Terpene_synth

Terpene_synth_C

Terpene_syn_C_2

PF01397 Terpene_synth 25-194 aa PF03936 Terpene_synth_C 251-488 aa PF19086 Terpene_syn_C_2 291-488 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766271.1`	Pfam	`PF01397`	Terpene_synth	Repeat	25	194	4.6e-51	173.9	Terpene synthase, N-terminal domain
`XP_057766271.1`	Pfam	`PF03936`	Terpene_synth_C	Domain	251	488	5.4e-77	259.1	Terpene synthase family, metal binding domain
`XP_057766271.1`	Pfam	`PF19086`	Terpene_syn_C_2	Domain	291	488	2.9e-44	151.9	Terpene synthase family 2, C-terminal metal binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057910288.1
AAGCACAAAAGAGAGTAACTAAGCATAGTGTTTGAAACAATATAATGGCTGCAGCTAATAGGGTGACTGCTATTTCAAGCAATGTGAGGCATATACACACTTTCAAGCCAAGCATGTGGGGTCACATTTTCTCAACTTTTTCTTTCGATAATCAGGTGCAGGAGAAGTATACTAAGGAAATGGAAGCATTGAAGAATGAAATAAGAAGAATGCTAATGGCTGCCAATTCTACCAAGCTCATGATATTGATCGACAAGCTT...

CDS

1 records

下载 CDS FASTA

LOC130986771
ATGGCTGCAGCTAATAGGGTGACTGCTATTTCAAGCAATGTGAGGCATATACACACTTTCAAGCCAAGCATGTGGGGTCACATTTTCTCAACTTTTTCTTTCGATAATCAGGTGCAGGAGAAGTATACTAAGGAAATGGAAGCATTGAAGAATGAAATAAGAAGAATGCTAATGGCTGCCAATTCTACCAAGCTCATGATATTGATCGACAAGCTTGAGCGTTTGGGAATCGCATATCACTTTGAGTTAGAAGTCGAGGA...

Protein

1 records

下载 Protein FASTA

XP_057766271.1
MAAANRVTAISSNVRHIHTFKPSMWGHIFSTFSFDNQVQEKYTKEMEALKNEIRRMLMAANSTKLMILIDKLERLGIAYHFELEVEEKLKQIYDFAEEEYYGDLLSTSLRFRLLRQHQFHVSCNVFEKFVEEDKKLKESLCNDVEGLLSLYEAAHVRIHGENILDEAVEFTVDHLNRMVPELKSPIKEKVQQALQLSIHRGVPILTVRFYISIYESMDDDQLLLKLAKINFNFLQNMYRKELSELSRWWNKFDLKSKLPF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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