当前解析结果
SmilChr05G002167| 统一新 Gene ID | SmilChr05G002167 |
|---|---|
| 名称 | SmilChr05G002167 |
| 描述 | gamma-cadinene synthase-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 22928597 - 22943298 / - |
| NCBI Gene ID | LOC130986772 |
|---|---|
| GeneID | 130986772 |
| locus_tag | - |
| NCBI Name | LOC130986772 |
| 原始查询 | LOC130986772 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | gamma-cadinene synthase-like |
| 产物 | gamma-cadinene synthase-like |
| Arabidopsis | AT5G23960 (TPS21)terpene synthase 21 [Source:NCBI gene (formerly Entrezgene);Acc:832461] identity=32; qcov=1; evalue=8.22e-97; confidence=low |
| Rice | Os08g0168000 (OsTPS31)- identity=34.2; qcov=1.01; evalue=2.06e-92; confidence=low |
| GO | GO:0000287 (magnesium ion binding); GO:0010333 (terpene synthase activity); GO:0016102 (diterpenoid biosynthetic process) |
| KEGG | smil00909 (Sesquiterpenoid and triterpenoid biosynthesis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01397 (Terpene_synth); PF03936 (Terpene_synth_C); PF19086 (Terpene_syn_C_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986772 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.60000 | XP_057766272.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057766272.1 |
| 3 | Chloroplast | 叶绿体 | 0.20000 | XP_057766272.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057766272.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057766272.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:22928928 |
C |
CA |
1bp_insertion | frameshift_variant | 6 | B126,B24,B51,B52,B81,C3 |
Chr5:22929632 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr5:22932824 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B24,C82,D11 |
Chr5:22932868 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B24,C82,D11 |
Chr5:22936025 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C74 |
Chr5:22936030 |
A |
AT |
1bp_insertion | frameshift_variant | 2 | B113,D5 |
Chr5:22936030 |
A |
AT |
1bp_insertion | CDS_variant | 2 | B113,D5 |
Chr5:22936130 |
A |
AT |
1bp_insertion | frameshift_variant | 2 | B131,B37 |
Chr5:22936130 |
A |
AT |
1bp_insertion | CDS_variant | 2 | B131,B37 |
Chr5:22936226 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B113,D5 |
Chr5:22936254 |
TG |
T |
1bp_deletion | frameshift_variant | 4 | A18,C40,C43,C5 |
Chr5:22936254 |
TG |
T |
1bp_deletion | CDS_variant | 4 | A18,C40,C43,C5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057766272.1PF01397
Terpene_synth 20-189 aa
PF03936
Terpene_synth_C 246-483 aa
PF19086
Terpene_syn_C_2 286-483 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057766272.1 |
Pfam | PF01397 |
Terpene_synth | Repeat | 20 | 189 | 1.2e-48 | 166.1 | Terpene synthase, N-terminal domain |
XP_057766272.1 |
Pfam | PF03936 |
Terpene_synth_C | Domain | 246 | 483 | 2.5e-73 | 247.0 | Terpene synthase family, metal binding domain |
XP_057766272.1 |
Pfam | PF19086 |
Terpene_syn_C_2 | Domain | 286 | 483 | 3.1e-40 | 138.8 | Terpene synthase family 2, C-terminal metal binding |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。