当前解析结果
SmilChr05G002203| 统一新 Gene ID | SmilChr05G002203 |
|---|---|
| 名称 | SmilChr05G002203 |
| 描述 | elongation factor 1-alpha |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 23487171 - 23490262 / + |
| NCBI Gene ID | LOC130986776 |
|---|---|
| GeneID | 130986776 |
| locus_tag | - |
| NCBI Name | LOC130986776 |
| 原始查询 | LOC130986776 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | elongation factor 1-alpha |
| 产物 | elongation factor 1-alpha |
| Arabidopsis | AT1G07920 (AT1G07920)GTP binding Elongation factor Tu family protein [Source:NCBI gene (formerly Entrezgene);Acc:837307] identity=95.3; qcov=1; evalue=0; confidence=high |
| Rice | Os03g0177400 (rfa1*)- identity=96.6; qcov=0.993; evalue=0; confidence=high |
| GO | GO:0003746 (translation elongation factor activity); GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0006412 (translation); GO:0006414 (translational elongation) |
| KEGG | smil03013 (Nucleocytoplasmic transport - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00009 (GTP_EFTU); PF03143 (GTP_EFTU_D3); PF03144 (GTP_EFTU_D2); PF22594 (GTP-eEF1A_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986776 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057766284.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057766284.1 |
| 3 | Melanosome | Melanosome | 0.20000 | XP_057766284.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057766284.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057766284.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:23488067 |
GC |
G |
1bp_deletion | frameshift_variant | 12 | A19,A23,B122,B139,B24,B40,B87,B90,C53,C58,C80,D5 |
Chr5:23488073 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B24,C82 |
Chr5:23488079 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B122,B87 |
Chr5:23488102 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B122,B87,C58,C74 |
Chr5:23488115 |
G |
GA |
1bp_insertion | frameshift_variant | 11 | A19,A23,B122,B17,B40,B87,C58,C70,C73,C74,D5 |
Chr5:23488129 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B59,C20,C41,C53 |
Chr5:23488181 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:23488238 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C40,C5 |
Chr5:23488244 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B83,C10,C52 |
Chr5:23488316 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C85,D2 |
Chr5:23488337 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C42 |
Chr5:23488451 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057766284.1PF00009
GTP_EFTU 6-222 aa
PF03144
GTP_EFTU_D2 248-313 aa
PF03143
GTP_EFTU_D3 322-429 aa
PF22594
GTP-eEF1A_C 327-427 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057766284.1 |
Pfam | PF00009 |
GTP_EFTU | Domain | 6 | 222 | 8.9e-58 | 195.7 | Elongation factor Tu GTP binding domain |
XP_057766284.1 |
Pfam | PF03144 |
GTP_EFTU_D2 | Domain | 248 | 313 | 6.8e-18 | 65.6 | Elongation factor Tu domain 2 |
XP_057766284.1 |
Pfam | PF03143 |
GTP_EFTU_D3 | Domain | 322 | 429 | 3.6e-28 | 98.7 | Elongation factor Tu C-terminal domain |
XP_057766284.1 |
Pfam | PF22594 |
GTP-eEF1A_C | Domain | 327 | 427 | 2e-37 | 128.4 | GTP-eEF1A C-terminal domain-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。