Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002207`

染色体: Chr05 坐标: 23526582-23529594 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002207`
名称	SmilChr05G002207
描述	uncharacterized SmilChr05G002207
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	23526582 - 23529594 / `-`

ID 对照

NCBI Gene ID	`LOC130986779`
GeneID	`130986779`
locus_tag	`-`
NCBI Name	`LOC130986779`
原始查询	`LOC130986779`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os08g0106900; species=rice; confidence=medium
产物	hit=Os08g0106900; species=rice; confidence=medium
Arabidopsis	`AT5G41980` (AT5G41980) nuclease [Source:NCBI gene (formerly Entrezgene);Acc:834203] identity=35; qcov=0.749; evalue=1.45e-47; confidence=medium
Rice	`Os08g0106900` - identity=41.8; qcov=0.89; evalue=7.9e-71; confidence=medium
GO	-
KEGG	-
Pfam	PF01609 (DDE_Tnp_1); PF04827 (Plant_tran); PF13359 (DDE_Tnp_4); PF26138 (DUF8040)
InterPro	-
eggNOG	-
NR	GeneID:130986779

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057766286.1`
2	Telomere	端粒	0.60000	`XP_057766286.1`
3	Chromosome	染色体	0.60000	`XP_057766287.1`
4	Centromere	着丝粒	0.00000	`XP_057766286.1`
5	Chromatin	染色质	0.00000	`XP_057766286.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:23527375`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:23527460`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A23,B140,B69
`Chr5:23527496`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A21,A4,B4
`Chr5:23527516`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B113,D5
`Chr5:23527544`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A21,A4,B4
`Chr5:23527549`	`TA`	`T`	1bp_deletion	frameshift_variant	2	A4,B4
`Chr5:23527549`	`TA`	`T`	1bp_deletion	CDS_variant	2	A4,B4
`Chr5:23527616`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A7,B104
`Chr5:23527893`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B126
`Chr5:23527900`	`A`	`ACC`	2bp_insertion	frameshift_variant	3	B38,B39,B66
`Chr5:23527900`	`A`	`ACC`	2bp_insertion	CDS_variant	3	B38,B39,B66
`Chr5:23527926`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B49

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766286.1

433 aa

216

433

DUF8040

Plant_tran

DDE_Tnp_1

DDE_Tnp_4

PF26138 DUF8040 93-179 aa PF04827 Plant_tran 202-374 aa PF01609 DDE_Tnp_1 204-371 aa PF13359 DDE_Tnp_4 211-372 aa

XP_057766287.1

406 aa

203

406

DUF8040

Plant_tran

DDE_Tnp_1

DDE_Tnp_4

PF26138 DUF8040 66-152 aa PF04827 Plant_tran 175-347 aa PF01609 DDE_Tnp_1 177-344 aa PF13359 DDE_Tnp_4 184-345 aa

XP_057766288.1

347 aa

174

347

DUF8040

DDE_Tnp_1

DDE_Tnp_4

PF26138 DUF8040 93-179 aa PF01609 DDE_Tnp_1 204-344 aa PF13359 DDE_Tnp_4 211-345 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766286.1`	Pfam	`PF26138`	DUF8040	Domain	93	179	7.2e-22	77.8	Domain of unknown function (DUF8040)
`XP_057766286.1`	Pfam	`PF04827`	Plant_tran	Family	202	374	4.3e-07	30.5	Plant transposon protein
`XP_057766286.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	204	371	5.4e-12	46.6	Transposase DDE domain
`XP_057766286.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	211	372	7e-23	81.7	DDE superfamily endonuclease
`XP_057766287.1`	Pfam	`PF26138`	DUF8040	Domain	66	152	6.5e-22	77.9	Domain of unknown function (DUF8040)
`XP_057766287.1`	Pfam	`PF04827`	Plant_tran	Family	175	347	3.8e-07	30.7	Plant transposon protein
`XP_057766287.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	177	344	4.8e-12	46.8	Transposase DDE domain
`XP_057766287.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	184	345	6.1e-23	81.9	DDE superfamily endonuclease
`XP_057766288.1`	Pfam	`PF26138`	DUF8040	Domain	93	179	5.3e-22	78.2	Domain of unknown function (DUF8040)
`XP_057766288.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	204	344	4.3e-06	27.3	Transposase DDE domain
`XP_057766288.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	211	345	2.9e-18	66.7	DDE superfamily endonuclease

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XR_009089396.1
TTTGGAGCTATTGATATACGAATTGAGCACATATTTTCTCAAAATATCTACTGGGTTCATTGTTATCTTCCTTGTAAATTGATATTTATGCTCCATTCGTTGCTTGTTCTTGGTGTTGTATATGAATTGCTGGGAATATTATGGCTGCGTAAATCGTGTTGTAATCTGTCGTGGAGTCTGCTGGTAATGTATGCTGCTATCTGAATGTGTCATTTGTGATTATTTGTGTAAGACTGATTTGGTGCGAAATAATCTTTGTG...

XM_057910304.1
TTGAATTGGAGGTTAACAACAGTTAAAAGGAGTGTTTTATTATTAACTGGGCGTTTGGATTGTATTATTGTAACATGGGAAGCCCGTCATTTATGTTGGGCCCTGCCCAAAAAGTACTATTACACCAAGCATCTGGAAGAGGCGGCACCCACTAGTTAAGGAGGCTTTGTTTCTACAGTAACCCAATCTATTTTTAATTCTTCCTAAATTGCCCATTAAAAAATCCATCGATTCCATTCAAAAGTTTCATTCACCGCGCA...

CDS

3 records

下载 CDS FASTA

LOC130986779
ATGGATGCTTTACAGACCTTGAGGAAGAGGAATGCATGTGTGTACATGGCAGTGGAAGAAATTTTATTTGAGCAGGAAATACAGCTGGCTGTTGTCATTGATTATTTTGAGAAATCAAAAAAACGAAAGCGTAAACATAGAACCTTGGTAGAACCCTATGGTATTATCCATAGAATTCCTGACCAAACTAAGCACCTGAATAGGATGATCGAGTTTAGTGATATGGACTGCATTTTAAACTTACGAATGGACCGGAATAC...

LOC130986779
ATGCTGCTATCTGAATGTGTCATTTGTGATTATTTGTGTAAGACTGATTTGGTGCGAAATAATCTTTGTGTCATTTATGGAATAGATGCTTTACAGACCTTGAGGAAGAGGAATGCATGTGTGTACATGGCAGTGGAAGAAATTTTATTTGAGCAGGAAATACAGCTGGCTGTTGTCATTGATTATTTTGAGAAATCAAAAAAACGAAAGCGTAAACATAGAACCTTGGTAGAACCCTATGGTATTATCCATAGAATTCC...

Protein

3 records

下载 Protein FASTA

XP_057766286.1
MLLSECVICDYLCKTDLVRNNLCVIYGIDALQTLRKRNACVYMAVEEILFEQEIQLAVVIDYFEKSKKRKRKHRTLVEPYGIIHRIPDQTKHLNRMIEFSDMDCILNLRMDRNTFGRLSQLLRVIGGLNDSKFVTVDEQLAMFLSVLAHHKKNRVVKFDFWRSGQTVSHYIHVVLKAILRLGVILLVKPTPVADDSTDMRWRWFKGCLGALDGTYINVMVSNADKPRYRTRKGQISTNTLAVCDHHMKFAYVLPGWEGSA...

XP_057766287.1
MDALQTLRKRNACVYMAVEEILFEQEIQLAVVIDYFEKSKKRKRKHRTLVEPYGIIHRIPDQTKHLNRMIEFSDMDCILNLRMDRNTFGRLSQLLRVIGGLNDSKFVTVDEQLAMFLSVLAHHKKNRVVKFDFWRSGQTVSHYIHVVLKAILRLGVILLVKPTPVADDSTDMRWRWFKGCLGALDGTYINVMVSNADKPRYRTRKGQISTNTLAVCDHHMKFAYVLPGWEGSAADSRVLRDAVNRVNGLKVPRGSYYLCD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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