当前解析结果
SmilChr05G002197| 统一新 Gene ID | SmilChr05G002197 |
|---|---|
| 名称 | SmilChr05G002197 |
| 描述 | uncharacterized SmilChr05G002197 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 23433538 - 23434474 / - |
| NCBI Gene ID | LOC130986793 |
|---|---|
| GeneID | 130986793 |
| locus_tag | - |
| NCBI Name | LOC130986793 |
| 原始查询 | LOC130986793 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os09g0480300; species=rice; confidence=low |
| 产物 | hit=Os09g0480300; species=rice; confidence=low |
| Arabidopsis | -- |
| Rice | Os09g0480300- identity=34.7; qcov=0.438; evalue=7.53e-12; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986793 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057766316.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057766316.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057766316.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057766316.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057766316.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:23433688 |
G |
A |
EMS_canonical_SNV | stop_gained | 84 | A10,A14,A15,A16,A19,A2,A20,A21,A22,A24,A25,A3,A6,A9,B1,B103,B106,B11,B111,B113,B124,B126,B131,B135,B137,B139,B14,B18,B20,B24,B27,B28,B35,B40,B44,B46,B5,B51,B52,B55,B56,B58,B60,B68,B70,B71,B74,B76,B77,B79,B8,B80,B84,B89,B9,B94,B95,B97,C1,C11,C18,C21,C3,C31,C37,C39,C4,C42,C46,C47,C48,C5,C53,C55,C57,C58,C69,C72,C75,C78,C83,C84,C85,C9 |
Chr5:23433691 |
G |
A |
EMS_canonical_SNV | stop_gained | 4 | A23,C1,C20,C47 |
Chr5:23433691 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A23,C1,C20,C47 |
Chr5:23433709 |
G |
A |
EMS_canonical_SNV | stop_gained | 82 | A11,A13,A15,A21,A23,A25,A4,A7,A8,A9,B10,B105,B11,B111,B113,B115,B119,B12,B129,B134,B138,B140,B16,B18,B19,B20,B22,B25,B29,B3,B34,B35,B38,B39,B40,B44,B45,B47,B49,B53,B55,B56,B62,B66,B67,B7,B73,B78,B85,B88,B94,B96,C15,C2,C23,C27,C28,C31,C33,C39,C44,C45,C46,C50,C53,C54,C56,C58,C6,C63,C65,C67,C74,C75,C78,C8,C81,C82,D3,D5,D7,D8 |
Chr5:23433719 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B11,C47 |
Chr5:23433722 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B118,B76,B85 |
Chr5:23433723 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B54,C32,C48,C61 |
Chr5:23433735 |
AC |
A |
1bp_deletion | frameshift_variant | 8 | B120,B123,B28,C23,C46,C52,C68,C79 |
Chr5:23433767 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr5:23433775 |
G |
A |
EMS_canonical_SNV | stop_gained | 38 | A1,B1,B110,B122,B123,B127,B16,B21,B22,B25,B3,B34,B41,B45,B5,B56,B62,B67,B7,B72,B73,B87,B91,B92,B96,C14,C27,C28,C36,C38,C4,C44,C54,C59,C64,C7,C86,C87 |
Chr5:23433783 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr5:23433787 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A8,B139,B87,B97,C4 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。