Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002782`

染色体: Chr05 坐标: 32523170-32532209 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002782`
名称	SmilChr05G002782
描述	probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	32523170 - 32532209 / `-`

ID 对照

NCBI Gene ID	`LOC130986870`
GeneID	`130986870`
locus_tag	`-`
NCBI Name	`LOC130986870`
原始查询	`LOC130986870`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840
产物	probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840
Arabidopsis	`AT3G14840` (AT3G14840) Leucine-rich repeat transmembrane protein kinase [Source:NCBI gene (formerly Entrezgene);Acc:820713] identity=60.9; qcov=1.03; evalue=0; confidence=high
Rice	`Os08g0203400` (SHR5) - identity=45; qcov=0.973; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF11721 (Malectin); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:130986870

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057766380.1`
2	Nucleus	细胞核	0.00000	`XP_057766380.1`
3	Chromosome	染色体	0.00000	`XP_057766380.1`
4	Centromere	着丝粒	0.00000	`XP_057766380.1`
5	Chromatin	染色质	0.00000	`XP_057766380.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:32523419`	`C`	`T`	EMS_canonical_SNV	stop_gained	148	A1,A10,A11,A14,A15,A2,A20,A21,A24,A4,A6,A7,A9,B101,B102,B103,B105,B106,B108,B110,B111,B112,B118,B119,B120,B121,B123,B124,B125,B126,B127,B13,B130,B132,B135,B136,B137,B138,B139,B14,B140,B15,B18,B20,B22,B24,B25,B27,B28,B29,B3,B30,B32,B35,B36,B37,B38,B39,B40,B41,B43,B44,B45,B47,B48,B49,B5,B50,B51,B52,B54,B56,B57,B58,B59,B60,B61,B62,B64,B69,B70,B72,B74,B75,B77,B8,B82,B83,B85,B86,B87,B88,B89,B91,B92,B95,B96,B97,B98,C1,C13,C14,C15,C16,C18,C19,C20,C21,C25,C26,C27,C28,C31,C33,C34,C36,C37,C38,C44,C46,C47,C48,C50,C53,C55,C57,C60,C61,C62,C63,C64,C66,C69,C70,C71,C73,C74,C75,C76,C77,C80,C81,C84,C87,D1,D2,D6,D8
`Chr5:32523421`	`G`	`GGT`	2bp_insertion	stop_gained,frameshift_variant	125	A10,A11,A14,A15,A2,A20,A21,A24,A4,A6,A8,A9,B101,B102,B105,B106,B108,B110,B111,B112,B118,B119,B120,B121,B123,B124,B125,B126,B13,B130,B135,B137,B138,B139,B14,B140,B15,B18,B20,B22,B24,B25,B27,B28,B29,B3,B30,B32,B35,B36,B37,B38,B39,B41,B43,B45,B47,B48,B49,B5,B50,B51,B52,B54,B56,B57,B58,B60,B61,B62,B64,B70,B75,B77,B8,B82,B83,B85,B86,B87,B89,B92,B95,B96,B97,B98,C1,C13,C15,C16,C18,C19,C20,C21,C25,C27,C31,C33,C36,C37,C38,C44,C46,C48,C50,C53,C55,C57,C60,C61,C63,C70,C71,C73,C74,C75,C77,C80,C81,C84,C87,D1,D2,D6,D8
`Chr5:32523422`	`TAC`	`T`	2bp_deletion	frameshift_variant	129	A10,A11,A14,A15,A2,A20,A21,A24,A4,A6,A8,A9,B101,B102,B105,B106,B108,B110,B111,B112,B118,B119,B120,B121,B123,B124,B125,B126,B13,B130,B135,B137,B138,B139,B14,B140,B15,B18,B20,B22,B24,B25,B27,B28,B29,B3,B30,B32,B35,B36,B37,B38,B39,B41,B43,B45,B47,B48,B49,B5,B50,B51,B52,B54,B55,B56,B57,B58,B60,B61,B62,B64,B70,B72,B75,B77,B8,B82,B83,B85,B86,B87,B89,B92,B95,B96,B97,B98,C1,C13,C15,C16,C18,C19,C20,C21,C23,C25,C27,C31,C33,C36,C37,C38,C44,C46,C48,C50,C53,C55,C57,C60,C61,C63,C70,C71,C73,C74,C75,C77,C80,C81,C84,C86,C87,D1,D2,D6,D8
`Chr5:32523428`	`G`	`GT`	1bp_insertion	frameshift_variant	5	B108,B22,B58,C18,C87
`Chr5:32523428`	`G`	`GT`	1bp_insertion	CDS_variant	5	B108,B22,B58,C18,C87
`Chr5:32523466`	`T`	`TG`	1bp_insertion	frameshift_variant	156	A1,A10,A11,A14,A15,A2,A20,A24,A4,A5,A6,A7,A8,A9,B101,B102,B103,B105,B106,B108,B110,B111,B112,B118,B119,B12,B120,B121,B123,B124,B125,B126,B127,B128,B13,B130,B132,B135,B136,B137,B138,B139,B14,B140,B15,B16,B18,B20,B22,B24,B25,B28,B29,B3,B30,B32,B33,B35,B36,B37,B38,B39,B4,B40,B41,B43,B44,B45,B47,B48,B49,B5,B50,B51,B52,B54,B55,B56,B57,B58,B59,B60,B61,B62,B64,B69,B70,B72,B74,B75,B76,B77,B8,B82,B83,B84,B85,B86,B87,B88,B89,B90,B91,B92,B96,B97,B98,C1,C13,C14,C15,C16,C18,C19,C20,C21,C23,C24,C25,C26,C27,C28,C31,C33,C34,C36,C37,C44,C46,C47,C48,C50,C51,C53,C55,C57,C60,C61,C62,C63,C64,C66,C69,C70,C71,C73,C74,C75,C76,C77,C80,C81,C84,C87,D2,D8
`Chr5:32523468`	`AGG`	`A`	2bp_deletion	frameshift_variant	3	A13,B79,C2
`Chr5:32523468`	`AGG`	`A`	2bp_deletion	CDS_variant	3	A13,B79,C2
`Chr5:32523470`	`GA`	`G`	1bp_deletion	frameshift_variant	153	A1,A10,A11,A14,A15,A2,A20,A24,A4,A5,A6,A7,A8,A9,B101,B102,B103,B105,B106,B108,B110,B111,B112,B118,B119,B12,B120,B121,B123,B124,B125,B126,B127,B128,B13,B130,B132,B135,B136,B137,B138,B139,B14,B140,B15,B16,B18,B20,B22,B25,B28,B29,B3,B30,B32,B33,B35,B36,B37,B38,B39,B4,B40,B41,B43,B44,B45,B47,B48,B49,B5,B50,B51,B52,B54,B55,B56,B57,B58,B59,B60,B61,B62,B69,B70,B72,B74,B75,B76,B77,B8,B82,B83,B84,B85,B86,B87,B88,B89,B90,B91,B92,B96,B97,B98,C1,C13,C14,C15,C16,C18,C19,C20,C21,C23,C24,C25,C26,C27,C28,C31,C33,C34,C36,C37,C44,C46,C47,C48,C50,C51,C53,C55,C57,C60,C61,C62,C63,C64,C66,C69,C70,C73,C74,C75,C76,C77,C80,C81,C84,C87,D2,D8
`Chr5:32523472`	`GC`	`G`	1bp_deletion	frameshift_variant	153	A1,A10,A11,A14,A15,A2,A20,A24,A4,A5,A6,A7,A8,A9,B101,B102,B103,B105,B106,B108,B110,B111,B112,B118,B119,B12,B120,B121,B123,B124,B125,B126,B127,B128,B13,B130,B132,B135,B136,B137,B138,B139,B14,B140,B15,B16,B18,B20,B22,B25,B28,B29,B3,B30,B32,B33,B35,B36,B37,B38,B39,B4,B40,B41,B43,B44,B45,B47,B48,B49,B5,B50,B51,B52,B54,B55,B56,B57,B58,B59,B60,B61,B62,B69,B70,B72,B74,B75,B76,B77,B8,B82,B83,B84,B85,B86,B87,B88,B89,B90,B91,B92,B96,B97,B98,C1,C13,C14,C15,C16,C18,C19,C20,C21,C23,C24,C25,C26,C27,C28,C31,C33,C34,C36,C37,C44,C46,C47,C48,C50,C51,C53,C55,C57,C60,C61,C62,C63,C64,C66,C69,C70,C73,C74,C75,C76,C77,C80,C81,C84,C87,D2,D8
`Chr5:32523479`	`CAT`	`C`	2bp_deletion	frameshift_variant	153	A1,A10,A11,A14,A15,A2,A20,A24,A4,A5,A6,A7,A8,A9,B101,B102,B103,B105,B106,B108,B110,B111,B112,B118,B119,B12,B120,B121,B123,B124,B125,B126,B127,B128,B13,B130,B132,B135,B136,B137,B138,B139,B14,B140,B15,B16,B18,B20,B22,B25,B28,B29,B3,B30,B32,B33,B35,B36,B37,B38,B39,B4,B40,B41,B43,B44,B45,B47,B48,B49,B5,B50,B51,B52,B54,B55,B56,B57,B58,B59,B60,B61,B62,B69,B70,B72,B74,B75,B76,B77,B8,B82,B83,B84,B85,B86,B87,B88,B89,B90,B91,B92,B96,B97,B98,C1,C13,C14,C15,C16,C18,C19,C20,C21,C23,C24,C25,C26,C27,C28,C31,C33,C34,C36,C37,C44,C46,C47,C48,C50,C51,C53,C55,C57,C60,C61,C62,C63,C64,C66,C69,C70,C73,C74,C75,C76,C77,C80,C81,C84,C87,D2,D8
`Chr5:32523490`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A13,B108,B79,C2,C23

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766380.1

1007 aa

504

1007

LRR_1

LRR_8

LRR_1

Malectin

Pkinase

PK_Tyr_Ser-Thr

PF00560 LRR_1 172-193 aa PF00560 LRR_1 291-312 aa PF13855 LRR_8 291-350 aa PF00560 LRR_1 316-337 aa PF11721 Malectin 414-597 aa PF00069 Pkinase 677-883 aa PF07714 PK_Tyr_Ser-Thr 678-890 aa

XP_057766381.1

862 aa

431

862

LRR_1

LRR_8

LRR_1

Malectin

Pkinase

PK_Tyr_Ser-Thr

PF00560 LRR_1 27-48 aa PF00560 LRR_1 146-167 aa PF13855 LRR_8 146-205 aa PF00560 LRR_1 171-192 aa PF11721 Malectin 269-452 aa PF00069 Pkinase 532-738 aa PF07714 PK_Tyr_Ser-Thr 533-745 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766380.1`	Pfam	`PF00560`	LRR_1	Repeat	172	193	8.8e-20	67.3	Leucine Rich Repeat
`XP_057766380.1`	Pfam	`PF00560`	LRR_1	Repeat	291	312	8.8e-20	67.3	Leucine Rich Repeat
`XP_057766380.1`	Pfam	`PF13855`	LRR_8	Repeat	291	350	7.7e-17	61.5	Leucine rich repeat
`XP_057766380.1`	Pfam	`PF00560`	LRR_1	Repeat	316	337	8.8e-20	67.3	Leucine Rich Repeat
`XP_057766380.1`	Pfam	`PF11721`	Malectin	Domain	414	597	3.4e-40	138.5	Malectin domain
`XP_057766380.1`	Pfam	`PF00069`	Pkinase	Domain	677	883	7.3e-45	154.1	Protein kinase domain
`XP_057766380.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	678	890	1.6e-47	162.7	Protein tyrosine and serine/threonine kinase
`XP_057766381.1`	Pfam	`PF00560`	LRR_1	Repeat	27	48	8.5e-18	61.4	Leucine Rich Repeat
`XP_057766381.1`	Pfam	`PF00560`	LRR_1	Repeat	146	167	8.5e-18	61.4	Leucine Rich Repeat
`XP_057766381.1`	Pfam	`PF13855`	LRR_8	Repeat	146	205	3.2e-15	56.3	Leucine rich repeat
`XP_057766381.1`	Pfam	`PF00560`	LRR_1	Repeat	171	192	8.5e-18	61.4	Leucine Rich Repeat
`XP_057766381.1`	Pfam	`PF11721`	Malectin	Domain	269	452	2.6e-40	138.8	Malectin domain
`XP_057766381.1`	Pfam	`PF00069`	Pkinase	Domain	532	738	5.6e-45	154.5	Protein kinase domain
`XP_057766381.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	533	745	1.2e-47	163.2	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057910397.1
AACTACACTTTTATCCTCACTCGCTTATCTTCTTCACACCCATCTCTCTCTCTCTCTCAAATCTAAGTCTGGGTCTTGACTCTTGAGAAATATGCAAAAAAGATGATATCATTTCTTAGAAATGAATTAATCAATCTTCATTCTAGTTTCTTCTTCACAATGCTATTTTGGAGGTTTATTGCGTTGATTTGGGTTGTGGGGTTGGTTTGTGGTGCAGCTGTTTTGCCTCCTGATGAAGTGGAATCACTGAGGGTAATAGC...

XM_057910398.1
GTTTCCGTAGCGTGTCGGAGAAGAGAAAGTGCTGCGGCAGTTCGAATGAGAGAAAAGGTGGCGGCCGCAGAAGACGCGAGATTCCATTGCTTTGTAGAGATTTTGGAGAGATCGGTCGGCGTTTCTGAGCAGGCAAATGTTGGGGAAAGGGTCAAAACCGAATTTGGATCCGATTAAGGAAAAAGCGGTTAAAGTGAAGAATTCTGAAGGCTCAGAGTCTTAAAGGATCAGTCCCACGCGAGCTCGTCAGACTCCCATTC...

CDS

2 records

下载 CDS FASTA

LOC130986870
ATGATATCATTTCTTAGAAATGAATTAATCAATCTTCATTCTAGTTTCTTCTTCACAATGCTATTTTGGAGGTTTATTGCGTTGATTTGGGTTGTGGGGTTGGTTTGTGGTGCAGCTGTTTTGCCTCCTGATGAAGTGGAATCACTGAGGGTAATAGCGAGGAGGTTAGGGAAGGAGGATTGGGATTTCAGCGTGGATCCATGCAGCGGGTCGTCGGGTTGGGCGATCCAGAATCCGGTTAAAGGCAACGAAAATGCACT...

LOC130986870
ATGAAACTTGTAAATATTTCCCTGCTTGGAAACCGTATAACTGGTTCAATACCAAAAGAGCTCGCCAACATCACTACACTTGAACAACTGGTTTTGGAGTACAATCAGTTGTCTGGAGCTATACCTCCCGAGTTAGGGAATCTTCCTCAAATACAAAGATTACTATTTACCTCCAACAATCTAACTGGAGAGTTGCCCGCAAATCTAGCAAAGTTGACCACTCTGACTGACTTTCGTGTTAGTGATAACAGCTTCAGAGG...

Protein

2 records

下载 Protein FASTA

XP_057766380.1
MISFLRNELINLHSSFFFTMLFWRFIALIWVVGLVCGAAVLPPDEVESLRVIARRLGKEDWDFSVDPCSGSSGWAIQNPVKGNENALTCNCTFDNNSTCHVTSIILKAQSLKGSVPRELVRLPFLQEIDLTRNYLNGTIPLEWASMKLVNISLLGNRITGSIPKELANITTLEQLVLEYNQLSGAIPPELGNLPQIQRLLFTSNNLTGELPANLAKLTTLTDFRVSDNSFRGSIPNFVQNWTNMEKLVIQASGLAGPIPS...

XP_057766381.1
MKLVNISLLGNRITGSIPKELANITTLEQLVLEYNQLSGAIPPELGNLPQIQRLLFTSNNLTGELPANLAKLTTLTDFRVSDNSFRGSIPNFVQNWTNMEKLVIQASGLAGPIPSGIASLTKLTDLRISDLNGNDSSLPSLSTLKKLKTLILRSCNIVGTLPEYIGEMTTLKVLDLSFNKLTGPIPESFIGLSNTDYIYLTGNSLNGPLPAWMLKDGDSIDLSYNNLTSGSLPSECQPRSLNLFASSSGNTNGAVSCLRS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器