Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002788`

染色体: Chr01 坐标: 46347565-46351842 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002788`
名称	SmilChr01G002788
描述	uncharacterized SmilChr01G002788
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	46347565 - 46351842 / `-`

ID 对照

NCBI Gene ID	`LOC130986874`
GeneID	`130986874`
locus_tag	`-`
NCBI Name	`LOC130986874`
原始查询	`LOC130986874`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	OsDjC55; symbol=OsDjC55; hit=Os06g0535300; species=rice; confidence=medium
产物	OsDjC55; symbol=OsDjC55; hit=Os06g0535300; species=rice; confidence=medium
Arabidopsis	`AT5G27240` (AT5G27240) DNAJ heat shock N-terminal domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:832782] identity=35.6; qcov=0.997; evalue=9.28e-115; confidence=medium
Rice	`Os06g0535300` (OsDjC55) - identity=36.1; qcov=0.955; evalue=3.23e-127; confidence=medium
GO	-
KEGG	-
Pfam	PF00226 (DnaJ); PF11926 (DUF3444)
InterPro	-
eggNOG	-
NR	GeneID:130986874

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057766390.1`
2	Chromosome	染色体	0.00000	`XP_057766390.1`
3	Centromere	着丝粒	0.00000	`XP_057766390.1`
4	Chromatin	染色质	0.00000	`XP_057766390.1`
5	Telomere	端粒	0.00000	`XP_057766390.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:46348200`	`T`	`TGA`	2bp_insertion	frameshift_variant	5	B114,B133,B41,B70,C82
`Chr1:46348200`	`T`	`TGA`	2bp_insertion	CDS_variant	5	B114,B133,B41,B70,C82
`Chr1:46348201`	`TGC`	`T`	2bp_deletion	frameshift_variant	5	B114,B133,B41,B70,C82
`Chr1:46348201`	`TGC`	`T`	2bp_deletion	CDS_variant	5	B114,B133,B41,B70,C82
`Chr1:46348208`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B80
`Chr1:46348244`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A18,B22,B41,C43,D8
`Chr1:46348332`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr1:46348850`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B131,C14,C74
`Chr1:46349049`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A6,B114,C37
`Chr1:46349403`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C19
`Chr1:46349413`	`TCA`	`T`	2bp_deletion	frameshift_variant	1	B103
`Chr1:46349413`	`TCA`	`T`	2bp_deletion	CDS_variant	1	B103

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766390.1

777 aa

388

777

DnaJ

DUF3444

PF00226 DnaJ 67-128 aa PF11926 DUF3444 484-689 aa

XP_057766399.1

777 aa

388

777

DnaJ

DUF3444

PF00226 DnaJ 67-128 aa PF11926 DUF3444 484-689 aa

XP_057766402.1

777 aa

388

777

DnaJ

DUF3444

PF00226 DnaJ 67-128 aa PF11926 DUF3444 484-689 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766390.1`	Pfam	`PF00226`	DnaJ	Domain	67	128	6.4e-20	71.7	DnaJ domain
`XP_057766390.1`	Pfam	`PF11926`	DUF3444	Family	484	689	6.2e-76	255.4	Domain of unknown function (DUF3444)
`XP_057766399.1`	Pfam	`PF00226`	DnaJ	Domain	67	128	6.4e-20	71.7	DnaJ domain
`XP_057766399.1`	Pfam	`PF11926`	DUF3444	Family	484	689	6.2e-76	255.4	Domain of unknown function (DUF3444)
`XP_057766402.1`	Pfam	`PF00226`	DnaJ	Domain	67	128	6.4e-20	71.7	DnaJ domain
`XP_057766402.1`	Pfam	`PF11926`	DUF3444	Family	484	689	6.2e-76	255.4	Domain of unknown function (DUF3444)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057910416.1
CTTCATCCTTGCAAGTTGCTAATGGCACGCACTCACAATAGTTTTTGGGGCAAATTAAATTTCTGAGGAACTCTCTTCCCCCTTTTTTTCTTCTCTACCACTCTCCAAAAACAATTCACTCTTTCTTTTTCCCTCCTTTTCTTTCCCTCTCTGTTGCAGCAAATCTCCATTGAAACACTACAGGAAAACCATCTTCTCACTCCCCACTCGTTTTCCAACCGTTGACTCTCTCTTTTCCCTCGCCTCCTCCCCTCTCACTC...

XM_057910419.1
CTTCATCCTTGCAAGTTGCTAATGGCACGCACTCACAATAGTTTTTGGGGCAAATTAAATTTCTGAGGAACTCTCTTCCCCCTTTTTTTCTTCTCTACCACTCTCCAAAAACAATTCACTCTTTCTTTTTCCCTCCTTTTCTTTCCCTCTCTGTTGCAGCAAATCTCCATTGAAACACTACAGGAAAACCATCTTCTCACTCCCCACTCGTTTTCCAACCGTTGACTCTCTCTTTTCCCTCGCCTCCTCCCCTCTCACTC...

CDS

3 records

下载 CDS FASTA

LOC130986874
ATGGAGTGCAACAAAGATGAGGCTATGAGGGCCAAGGAAATTGCTGAAAAGAAGATGCAAATGAACGACTTTGAAGGTGCCCGAAAGATTGCTTTGAAAGGAAAAAACCTCTACCCTGAACTTGAAAATATTACCCAGATGCTGAGCATCTGTGATGTGCACTGCTCAGCTCAAAACAGGATTCTAGGATCCGAAAAAGATTGGTATGGAGTCCTTCAAGTTGAAAAGTTGGCTGATGAGGCAATAATCAAGAAACAATA...

Protein

3 records

下载 Protein FASTA

XP_057766390.1
MECNKDEAMRAKEIAEKKMQMNDFEGARKIALKGKNLYPELENITQMLSICDVHCSAQNRILGSEKDWYGVLQVEKLADEAIIKKQYRRLALILHPDKNRFPGAEGAFKLICEANALLSDPAKKSLYDNKIRVWSRHGTTNPPNHHTNRSSQPNNQYGAQSKNTSNGFNSLNHYQNTQSTSVFWTCCPFCKVNYQYHRQYIKKLLQCTNSKCSKGFVAYEVSAPYVSPAEVGRQGSQHVPSKPDILKPDGYQANCEIGRQ...

XP_057766399.1
MECNKDEAMRAKEIAEKKMQMNDFEGARKIALKGKNLYPELENITQMLSICDVHCSAQNRILGSEKDWYGVLQVEKLADEAIIKKQYRRLALILHPDKNRFPGAEGAFKLICEANALLSDPAKKSLYDNKIRVWSRHGTTNPPNHHTNRSSQPNNQYGAQSKNTSNGFNSLNHYQNTQSTSVFWTCCPFCKVNYQYHRQYIKKLLQCTNSKCSKGFVAYEVSAPYVSPAEVGRQGSQHVPSKPDILKPDGYQANCEIGRQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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