Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002791`

染色体: Chr05 坐标: 32642202-32646200 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002791`
名称	SmilChr05G002791
描述	uncharacterized SmilChr05G002791
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	32642202 - 32646200 / `+`

ID 对照

NCBI Gene ID	`LOC130986878`
GeneID	`130986878`
locus_tag	`-`
NCBI Name	`LOC130986878`
原始查询	`LOC130986878`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DNA-directed DNA polymerase [Source:NCBI gene (formerly Entrezgene);Acc:844201]; symbol=POLD3; hit=AT1G78650; species=arabidopsis; confidence=medium
产物	DNA-directed DNA polymerase [Source:NCBI gene (formerly Entrezgene);Acc:844201]; symbol=POLD3; hit=AT1G78650; species=arabidopsis; confidence=medium
Arabidopsis	`AT1G78650` (POLD3) DNA-directed DNA polymerase [Source:NCBI gene (formerly Entrezgene);Acc:844201] identity=43.3; qcov=1.02; evalue=7.45e-120; confidence=medium
Rice	`Os01g0204000` (P0451C06.10-1) - identity=42.5; qcov=1.02; evalue=3.54e-106; confidence=medium
GO	GO:0003887 (DNA-directed DNA polymerase activity); GO:0005634 (nucleus); GO:0006260 (DNA replication); GO:0006271 (DNA strand elongation involved in DNA replication); GO:0006297 (nucleotide-excision repair, DNA gap filling); GO:0043625 (delta DNA polymerase complex); GO:1904161 (DNA synthesis involved in UV-damage excision repair)
KEGG	smil03030 (DNA replication - Salvia miltiorrhiza (redroot sage)); smil03410 (Base excision repair - Salvia miltiorrhiza (redroot sage)); smil03420 (Nucleotide excision repair - Salvia miltiorrhiza (redroot sage)); smil03430 (Mismatch repair - Salvia miltiorrhiza (redroot sage)); smil03440 (Homologous recombination - Salvia miltiorrhiza (redroot sage))
Pfam	PF09507 (CDC27)
InterPro	-
eggNOG	-
NR	GeneID:130986878

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057766394.1`
2	Nucleoplasm	核质	0.40000	`XP_057766394.1`
3	Chromosome	染色体	0.20000	`XP_057766394.1`
4	Centromere	着丝粒	0.00000	`XP_057766394.1`
5	Chromatin	染色质	0.00000	`XP_057766394.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:32643661`	`GT`	`G`	1bp_deletion	frameshift_variant	1	C40
`Chr5:32643661`	`GT`	`G`	1bp_deletion	CDS_variant	1	C40
`Chr5:32643702`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr5:32643772`	`C`	`T`	EMS_canonical_SNV	stop_gained	27	A13,A2,A8,B100,B113,B119,B120,B132,B60,B67,B71,B74,B96,C13,C14,C20,C24,C25,C29,C37,C40,C46,C5,C57,C83,C87,D4
`Chr5:32644125`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B121,B27,B99,C4,C75
`Chr5:32644175`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr5:32644217`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B134
`Chr5:32644308`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A1,C42,D8
`Chr5:32644666`	`T`	`TAC`	2bp_insertion	frameshift_variant	15	B108,B15,B19,B29,B76,B78,C35,C36,C39,C41,C52,C63,C69,C81,C9
`Chr5:32644851`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C77
`Chr5:32644979`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B121,B27,B99,C4,C75

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766394.1

525 aa

262

525

CDC27

PF09507 CDC27 23-524 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766394.1`	Pfam	`PF09507`	CDC27	Family	23	524	8.3e-21	75.6	DNA polymerase subunit Cdc27

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057910411.1
ATTGTGCTGTGCGAAAATCCTCTCCCGCAAGGCCCTAAAATTCCCAAATTTGCTGCTTGTGGCGGGAAATCAAAGAGCCCCTTTGAGAGGGAAAACTGCAGCGAAAATACTTTCCTTCCTCTCTGATTTTCTTTTGTCGTCGGAAAAGTTTCCGTTTGATCTGACGAGAACAATGGCCGAAACCGCAACTCTTGGAATTCTGGAAGAGATTCGTTCCTTCGTCTCCGATAGGCTTCAAGTGATTTCCTACAAATGGCTAA...

CDS

1 records

下载 CDS FASTA

LOC130986878
ATGGCCGAAACCGCAACTCTTGGAATTCTGGAAGAGATTCGTTCCTTCGTCTCCGATAGGCTTCAAGTGATTTCCTACAAATGGCTAAGTCGAAATTTTTCGGTTTCCTCCAATGCTGCAAAGAGACTTCTAGAGGAGTTCGTTGAAAATCATGGAGATGGATTAGTGGTGATTTACTCTTTATCTGGCTGGCTGAAGAATAATCCTACAACCCGCCATATAAGGGTTGTCCCCAAGCATATGCTTGCAGATGCGAAACA...

Protein

1 records

下载 Protein FASTA

XP_057766394.1
MAETATLGILEEIRSFVSDRLQVISYKWLSRNFSVSSNAAKRLLEEFVENHGDGLVVIYSLSGWLKNNPTTRHIRVVPKHMLADAKQEFDGKCSIQVYSIQACLPKDPATLWNHEFVQAEDLHKQPSTVDNCLRDNRFSGVSNSFVKRTAGGTPLGTGSLQVKSTGVSGLLSSSSIPQITAAPQSIQKTVQNAVANAGVKSPSIAKPVKTEGNVKPDLAQVVEKEKVPRSLPNNKKGQNDKNSSGTGGSLASMWGRASAK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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