当前解析结果
SmilChr05G002836| 统一新 Gene ID | SmilChr05G002836 |
|---|---|
| 名称 | SmilChr05G002836 |
| 描述 | ABC transporter G family member 10-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 33678786 - 33681104 / - |
| NCBI Gene ID | LOC130986907 |
|---|---|
| GeneID | 130986907 |
| locus_tag | - |
| NCBI Name | LOC130986907 |
| 原始查询 | LOC130986907 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter G family member 10-like |
| 产物 | ABC transporter G family member 10-like |
| Arabidopsis | AT1G53270 (ABCG10)ABC-2 type transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:841761] identity=57.3; qcov=1.04; evalue=0; confidence=high |
| Rice | Os01g0615500 (OsABCG2)- identity=56.8; qcov=0.973; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0055085 (transmembrane transport); GO:0140359 (ABC-type transporter activity) |
| KEGG | smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage)); smil04981 (Folate transport and metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00005 (ABC_tran); PF01061 (ABC2_membrane); PF06422 (PDR_CDR) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986907 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057766433.1 |
| 2 | Vacuole | 液泡 | 0.80000 | XP_057766433.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.80000 | XP_057766433.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057766433.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057766433.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:33678900 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B33 |
Chr5:33679084 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B109,B128 |
Chr5:33679320 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr5:33679458 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B37,C71 |
Chr5:33679476 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A1,C42,D8 |
Chr5:33679650 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B96,C8 |
Chr5:33679689 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
Chr5:33679727 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C31,C58 |
Chr5:33679728 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C31,C58 |
Chr5:33680001 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr5:33680172 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C38 |
Chr5:33680184 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057766433.1PF00005
ABC_tran 31-177 aa
PF01061
ABC2_membrane 307-518 aa
PF06422
PDR_CDR 529-573 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057766433.1 |
Pfam | PF00005 |
ABC_tran | Domain | 31 | 177 | 4e-30 | 105.9 | ABC transporter |
XP_057766433.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 307 | 518 | 1.2e-48 | 166.1 | ABC-2 type transporter |
XP_057766433.1 |
Pfam | PF06422 |
PDR_CDR | Family | 529 | 573 | 1.9e-06 | 28.3 | CDR ABC transporter |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。