Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002890`

染色体: Chr05 坐标: 34672089-34681025 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002890`
名称	SmilChr05G002890
描述	uncharacterized SmilChr05G002890
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	34672089 - 34681025 / `+`

ID 对照

NCBI Gene ID	`LOC130986961`
GeneID	`130986961`
locus_tag	`-`
NCBI Name	`LOC130986961`
原始查询	`LOC130986961`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Ypt/Rab-GAP domain of gyp1p superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835568]; symbol=AT5G54780; hit=AT5G54780; species=arabidopsis; confidence=high
产物	Ypt/Rab-GAP domain of gyp1p superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835568]; symbol=AT5G54780; hit=AT5G54780; species=arabidopsis; confidence=high
Arabidopsis	`AT5G54780` (AT5G54780) Ypt/Rab-GAP domain of gyp1p superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835568] identity=72.1; qcov=0.879; evalue=1.17e-167; confidence=high
Rice	`Os07g0525400` - identity=63.4; qcov=0.943; evalue=2.24e-163; confidence=high
GO	GO:0005096 (GTPase activator activity); GO:0090630 (activation of GTPase activity)
KEGG	-
Pfam	PF00566 (RabGAP-TBC); PF23436 (RabGap-TBC_2)
InterPro	-
eggNOG	-
NR	GeneID:130986961

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057766495.1`
2	Cytoplasm	细胞质	1.00000	`XP_057766496.1`
3	Nucleus	细胞核	0.00000	`XP_057766495.1`
4	Chromosome	染色体	0.00000	`XP_057766495.1`
5	Centromere	着丝粒	0.00000	`XP_057766495.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:34672444`	`GA`	`G`	1bp_deletion	frameshift_variant	1	B17
`Chr5:34672444`	`GA`	`G`	1bp_deletion	CDS_variant	1	B17
`Chr5:34672456`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A9,B103,C12,C57,D7
`Chr5:34677279`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C2
`Chr5:34678785`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B103,C12,C57,D7
`Chr5:34679869`	`GGT`	`G`	2bp_deletion	CDS_variant	1	D7
`Chr5:34680726`	`AT`	`A`	1bp_deletion	frameshift_variant	60	A18,A23,B100,B106,B107,B111,B115,B119,B124,B128,B130,B132,B133,B138,B139,B14,B15,B18,B2,B21,B24,B26,B31,B32,B5,B61,B62,B64,B67,B76,B84,B88,C13,C16,C20,C24,C25,C3,C30,C37,C40,C41,C42,C43,C46,C47,C49,C52,C54,C59,C6,C67,C71,C76,C77,C83,D11,D3,D5,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766495.1

457 aa

228

457

RabGAP-TBC

RabGap-TBC_2

PF00566 RabGAP-TBC 184-340 aa PF23436 RabGap-TBC_2 219-338 aa

XP_057766496.1

371 aa

186

371

RabGAP-TBC

RabGap-TBC_2

PF00566 RabGAP-TBC 184-362 aa PF23436 RabGap-TBC_2 219-335 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766495.1`	Pfam	`PF00566`	RabGAP-TBC	Family	184	340	5.8e-38	131.4	Rab-GTPase-TBC domain
`XP_057766495.1`	Pfam	`PF23436`	RabGap-TBC_2	Domain	219	338	3.9e-11	43.7	RabGAP TBC domain
`XP_057766496.1`	Pfam	`PF00566`	RabGAP-TBC	Family	184	362	2.1e-38	132.9	Rab-GTPase-TBC domain
`XP_057766496.1`	Pfam	`PF23436`	RabGap-TBC_2	Domain	219	335	5.9e-11	43.2	RabGAP TBC domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057910512.1
GCCGAAATGGACCAATTCCAACATTTATAAATGAAATGAAATGGGCATCACCTTCTTTGCCATTCACCAACCTCATCAAATTTATTAATACTATAATTAAATAAGAATTAAGACCAGCGAAAGAAACACAGCTTCCAGCGGTTTTTTCAATATTCATTTCTGATTTCTCTCTGTTTTTCCCTTCTCCACCTGAACATCTGTTGAGAGAGAGAGAGAGAGAGAGAGGAGAGGGAGGCAGGCAGTGATCTCCAGGGGGGAAT...

XM_057910513.1
GGACCAATTCCAACATTTATAAATGAAATGAAATGGGCATCACCTTCTTTGCCATTCACCAACCTCATCAAATTTATTAATACTATAATTAAATAAGAATTAAGACCAGCGAAAGAAACACAGCTTCCAGCGGTTTTTTCAATATTCATTTCTGATTTCTCTCTGTTTTTCCCTTCTCCACCTGAACATCTGTTGAGAGAGAGAGAGAGAGAGAGAGGAGAGGGAGGCAGGCAGTGATCTCCAGGGGGGAATGCTGGAAA...

CDS

2 records

下载 CDS FASTA

LOC130986961
ATGCTGGAAAGGATCATTCTGTGTAAATTGGGAAAAATGTGGAAGGACGTAGGAACTCCAGCCGATTCTTACTATCAAGTGCGACCTGACTGCACTGATGTACCCGAAAGCAAGTTTAGAATCAAGGCTGGCAGAACTTTAAGTGCACGGAAATGGCATGCTGCTTTCTCTCCTGAAGGTTATCTAGATATTGGAAAAATTCTCAATCGAGTCCAGCGTGGGGGTGTTCACCCATCAATTAGAGGTGAAGTTTGGGAATT...

Protein

2 records

下载 Protein FASTA

XP_057766495.1
MLERIILCKLGKMWKDVGTPADSYYQVRPDCTDVPESKFRIKAGRTLSARKWHAAFSPEGYLDIGKILNRVQRGGVHPSIRGEVWEFLLGCYDPSSTFEEREQIRQRRRVKYALLKEECRQMFPLVGMGKFVTAPIITEDGEPIREPIVLQQIDLEDEPASLSTGNDASSSEVPKLSNGCGPMDKKEIQWKLTLHQIGLDVVRTDRTLVFYEKQKNLSKLWDILAVYSWFDPDIGYCQGMSDLCSPMIILLEDEADAFWC...

XP_057766496.1
MLERIILCKLGKMWKDVGTPADSYYQVRPDCTDVPESKFRIKAGRTLSARKWHAAFSPEGYLDIGKILNRVQRGGVHPSIRGEVWEFLLGCYDPSSTFEEREQIRQRRRVKYALLKEECRQMFPLVGMGKFVTAPIITEDGEPIREPIVLQQIDLEDEPASLSTGNDASSSEVPKLSNGCGPMDKKEIQWKLTLHQIGLDVVRTDRTLVFYEKQKNLSKLWDILAVYSWFDPDIGYCQGMSDLCSPMIILLEDEADAFWC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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