当前解析结果
SmilChr05G002895| 统一新 Gene ID | SmilChr05G002895 |
|---|---|
| 名称 | SmilChr05G002895 |
| 描述 | polyubiquitin-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 34750353 - 34753188 / - |
| NCBI Gene ID | LOC130986967 |
|---|---|
| GeneID | 130986967 |
| locus_tag | - |
| NCBI Name | LOC130986967 |
| 原始查询 | LOC130986967 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | polyubiquitin-like |
| 产物 | polyubiquitin-like |
| Arabidopsis | AT4G05320 (UBQ10)polyubiquitin 10 [Source:NCBI gene (formerly Entrezgene);Acc:825880] identity=100; qcov=0.857; evalue=0; confidence=high |
| Rice | Os06g0681400 (Ubi1)- identity=100; qcov=0.998; evalue=0; confidence=high |
| GO | GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0016567 (protein ubiquitination); GO:0019941 (modification-dependent protein catabolic process); GO:0031386 (protein tag activity); GO:0031625 (ubiquitin protein ligase binding) |
| KEGG | smil04120 (Ubiquitin mediated proteolysis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00240 (ubiquitin); PF11976 (Rad60-SLD); PF14560 (Ubiquitin_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986967 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057766501.1 |
| 2 | Nucleus | 细胞核 | 0.80000 | XP_057766501.1 |
| 3 | Cytosol | 细胞质基质 | 0.80000 | XP_057766501.1 |
| 4 | Nucleoplasm | 核质 | 0.60000 | XP_057766501.1 |
| 5 | Nuclear body | 核内小体 | 0.20000 | XP_057766501.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:34750637 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | B23 |
Chr5:34750637 |
GA |
G |
1bp_deletion | CDS_variant | 1 | B23 |
Chr5:34750700 |
AAG |
A |
2bp_deletion | frameshift_variant | 1 | B27 |
Chr5:34750700 |
AAG |
A |
2bp_deletion | CDS_variant | 1 | B27 |
Chr5:34750844 |
CAG |
C |
2bp_deletion | frameshift_variant | 1 | B67 |
Chr5:34750844 |
CAG |
C |
2bp_deletion | CDS_variant | 1 | B67 |
Chr5:34751048 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C32,C68 |
Chr5:34751051 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A6 |
Chr5:34751054 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A6 |
Chr5:34751060 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A6 |
Chr5:34751075 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A6 |
Chr5:34751492 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057766501.1PF11976
Rad60-SLD 1-71 aa
PF00240
ubiquitin 3-74 aa
PF14560
Ubiquitin_2 12-69 aa
PF11976
Rad60-SLD 77-147 aa
PF00240
ubiquitin 79-150 aa
PF14560
Ubiquitin_2 87-145 aa
PF11976
Rad60-SLD 153-223 aa
PF00240
ubiquitin 155-226 aa
PF14560
Ubiquitin_2 163-221 aa
PF11976
Rad60-SLD 229-299 aa
PF00240
ubiquitin 231-302 aa
PF14560
Ubiquitin_2 239-297 aa
PF11976
Rad60-SLD 305-375 aa
PF00240
ubiquitin 307-378 aa
PF14560
Ubiquitin_2 315-373 aa
PF11976
Rad60-SLD 381-451 aa
PF00240
ubiquitin 383-454 aa
PF14560
Ubiquitin_2 391-449 aa
PF11976
Rad60-SLD 457-527 aa
PF00240
ubiquitin 459-530 aa
PF14560
Ubiquitin_2 467-525 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057766501.1 |
Pfam | PF11976 |
Rad60-SLD | Family | 1 | 71 | 1.1e-120 | 394.3 | Ubiquitin-2 like Rad60 SUMO-like |
XP_057766501.1 |
Pfam | PF00240 |
ubiquitin | Domain | 3 | 74 | 1.9e-226 | 733.1 | Ubiquitin family |
XP_057766501.1 |
Pfam | PF14560 |
Ubiquitin_2 | Domain | 12 | 69 | 4.2e-37 | 127.2 | Ubiquitin-like domain |
XP_057766501.1 |
Pfam | PF11976 |
Rad60-SLD | Family | 77 | 147 | 1.1e-120 | 394.3 | Ubiquitin-2 like Rad60 SUMO-like |
XP_057766501.1 |
Pfam | PF00240 |
ubiquitin | Domain | 79 | 150 | 1.9e-226 | 733.1 | Ubiquitin family |
XP_057766501.1 |
Pfam | PF14560 |
Ubiquitin_2 | Domain | 87 | 145 | 4.2e-37 | 127.2 | Ubiquitin-like domain |
XP_057766501.1 |
Pfam | PF11976 |
Rad60-SLD | Family | 153 | 223 | 1.1e-120 | 394.3 | Ubiquitin-2 like Rad60 SUMO-like |
XP_057766501.1 |
Pfam | PF00240 |
ubiquitin | Domain | 155 | 226 | 1.9e-226 | 733.1 | Ubiquitin family |
XP_057766501.1 |
Pfam | PF14560 |
Ubiquitin_2 | Domain | 163 | 221 | 4.2e-37 | 127.2 | Ubiquitin-like domain |
XP_057766501.1 |
Pfam | PF11976 |
Rad60-SLD | Family | 229 | 299 | 1.1e-120 | 394.3 | Ubiquitin-2 like Rad60 SUMO-like |
XP_057766501.1 |
Pfam | PF00240 |
ubiquitin | Domain | 231 | 302 | 1.9e-226 | 733.1 | Ubiquitin family |
XP_057766501.1 |
Pfam | PF14560 |
Ubiquitin_2 | Domain | 239 | 297 | 4.2e-37 | 127.2 | Ubiquitin-like domain |
XP_057766501.1 |
Pfam | PF11976 |
Rad60-SLD | Family | 305 | 375 | 1.1e-120 | 394.3 | Ubiquitin-2 like Rad60 SUMO-like |
XP_057766501.1 |
Pfam | PF00240 |
ubiquitin | Domain | 307 | 378 | 1.9e-226 | 733.1 | Ubiquitin family |
XP_057766501.1 |
Pfam | PF14560 |
Ubiquitin_2 | Domain | 315 | 373 | 4.2e-37 | 127.2 | Ubiquitin-like domain |
XP_057766501.1 |
Pfam | PF11976 |
Rad60-SLD | Family | 381 | 451 | 1.1e-120 | 394.3 | Ubiquitin-2 like Rad60 SUMO-like |
XP_057766501.1 |
Pfam | PF00240 |
ubiquitin | Domain | 383 | 454 | 1.9e-226 | 733.1 | Ubiquitin family |
XP_057766501.1 |
Pfam | PF14560 |
Ubiquitin_2 | Domain | 391 | 449 | 4.2e-37 | 127.2 | Ubiquitin-like domain |
XP_057766501.1 |
Pfam | PF11976 |
Rad60-SLD | Family | 457 | 527 | 1.1e-120 | 394.3 | Ubiquitin-2 like Rad60 SUMO-like |
XP_057766501.1 |
Pfam | PF00240 |
ubiquitin | Domain | 459 | 530 | 1.9e-226 | 733.1 | Ubiquitin family |
XP_057766501.1 |
Pfam | PF14560 |
Ubiquitin_2 | Domain | 467 | 525 | 4.2e-37 | 127.2 | Ubiquitin-like domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。