当前解析结果
SmilChr05G002896| 统一新 Gene ID | SmilChr05G002896 |
|---|---|
| 名称 | SmilChr05G002896 |
| 描述 | protein NDR1-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 34757412 - 34759111 / + |
| NCBI Gene ID | LOC130986968 |
|---|---|
| GeneID | 130986968 |
| locus_tag | - |
| NCBI Name | LOC130986968 |
| 原始查询 | LOC130986968 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein NDR1-like |
| 产物 | protein NDR1-like |
| Arabidopsis | AT3G20600 (NDR1)Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family [Source:NCBI gene (formerly Entrezgene);Acc:821607] identity=44.8; qcov=1.02; evalue=1.08e-42; confidence=medium |
| Rice | Os02g0538700- identity=26.9; qcov=0.983; evalue=4.01e-11; confidence=low |
| GO | GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986968 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057766502.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057766502.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057766502.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057766502.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057766502.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:34757644 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
Chr5:34757787 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A1,C42,D8 |
Chr5:34757855 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr5:34757861 |
G |
GGC |
2bp_insertion | frameshift_variant | 1 | C4 |
Chr5:34757861 |
G |
GGC |
2bp_insertion | CDS_variant | 1 | C4 |
Chr5:34757906 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr5:34757908 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
Chr5:34758615 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr5:34758659 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A1,C42,D8 |
Chr5:34758664 |
C |
T |
EMS_canonical_SNV | stop_gained | 17 | A11,B16,B29,B35,B44,B6,B73,B97,C31,C38,C39,C56,C58,C64,C66,C67,D8 |
Chr5:34758692 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B132,B8 |
Chr5:34758707 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B117,B136 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。