当前解析结果
SmilChr05G002918| 统一新 Gene ID | SmilChr05G002918 |
|---|---|
| 名称 | SmilChr05G002918 |
| 描述 | putative anthocyanidin reductase |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 35143635 - 35146401 / - |
| NCBI Gene ID | LOC130986989 |
|---|---|
| GeneID | 130986989 |
| locus_tag | - |
| NCBI Name | LOC130986989 |
| 原始查询 | LOC130986989 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative anthocyanidin reductase |
| 产物 | putative anthocyanidin reductase |
| Arabidopsis | AT4G27250 (AT4G27250)NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828833] identity=62.6; qcov=0.941; evalue=6.24e-130; confidence=high |
| Rice | Os06g0683100- identity=52.5; qcov=1.02; evalue=1.46e-102; confidence=high |
| GO | GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor) |
| KEGG | - |
| Pfam | PF01073 (3Beta_HSD); PF01370 (Epimerase); PF02719 (Polysacc_synt_2); PF05368 (NmrA); PF07993 (NAD_binding_4); PF08659 (KR); PF13460 (NAD_binding_10); PF16363 (GDP_Man_Dehyd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986989 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057766517.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057766517.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057766517.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057766518.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057766518.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:35144075 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B74,B77,B91,C59,D3 |
Chr5:35144184 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A13,B139,C4 |
Chr5:35144471 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B140,B23,C71,C85 |
Chr5:35144519 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B23,C71 |
Chr5:35144671 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A1,C42,D8 |
Chr5:35144680 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B109 |
Chr5:35144694 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B23,B75 |
Chr5:35145232 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B127,D2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057766517.1PF05368
NmrA 10-99 aa
PF01370
Epimerase 13-280 aa
PF01073
3Beta_HSD 14-91 aa
PF16363
GDP_Man_Dehyd 14-96 aa
PF07993
NAD_binding_4 14-210 aa
PF13460
NAD_binding_10 16-164 aa
PF01073
3Beta_HSD 102-169 aa
XP_057766518.1PF05368
NmrA 10-149 aa
PF08659
KR 11-142 aa
PF02719
Polysacc_synt_2 13-136 aa
PF01370
Epimerase 13-266 aa
PF01073
3Beta_HSD 14-156 aa
PF07993
NAD_binding_4 14-196 aa
PF16363
GDP_Man_Dehyd 14-240 aa
PF13460
NAD_binding_10 16-150 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057766517.1 |
Pfam | PF05368 |
NmrA | Family | 10 | 99 | 4.2e-11 | 43.7 | NmrA-like family |
XP_057766517.1 |
Pfam | PF01370 |
Epimerase | Family | 13 | 280 | 8.1e-26 | 91.6 | NAD dependent epimerase/dehydratase family |
XP_057766517.1 |
Pfam | PF01073 |
3Beta_HSD | Family | 14 | 91 | 6.4e-12 | 45.8 | 3-beta hydroxysteroid dehydrogenase/isomerase family |
XP_057766517.1 |
Pfam | PF16363 |
GDP_Man_Dehyd | Domain | 14 | 96 | 8.8e-14 | 52.4 | GDP-mannose 4,6 dehydratase |
XP_057766517.1 |
Pfam | PF07993 |
NAD_binding_4 | Family | 14 | 210 | 6.4e-10 | 39.3 | Male sterility protein |
XP_057766517.1 |
Pfam | PF13460 |
NAD_binding_10 | Domain | 16 | 164 | 1.1e-13 | 52.1 | NAD(P)H-binding |
XP_057766517.1 |
Pfam | PF01073 |
3Beta_HSD | Family | 102 | 169 | 6.4e-12 | 45.8 | 3-beta hydroxysteroid dehydrogenase/isomerase family |
XP_057766518.1 |
Pfam | PF05368 |
NmrA | Family | 10 | 149 | 5e-11 | 43.5 | NmrA-like family |
XP_057766518.1 |
Pfam | PF08659 |
KR | Family | 11 | 142 | 4.2e-07 | 30.8 | KR domain |
XP_057766518.1 |
Pfam | PF02719 |
Polysacc_synt_2 | Family | 13 | 136 | 2.6e-05 | 24.3 | Polysaccharide biosynthesis protein |
XP_057766518.1 |
Pfam | PF01370 |
Epimerase | Family | 13 | 266 | 1.1e-25 | 91.2 | NAD dependent epimerase/dehydratase family |
XP_057766518.1 |
Pfam | PF01073 |
3Beta_HSD | Family | 14 | 156 | 5.8e-13 | 49.2 | 3-beta hydroxysteroid dehydrogenase/isomerase family |
XP_057766518.1 |
Pfam | PF07993 |
NAD_binding_4 | Family | 14 | 196 | 8.4e-11 | 42.2 | Male sterility protein |
XP_057766518.1 |
Pfam | PF16363 |
GDP_Man_Dehyd | Domain | 14 | 240 | 3.7e-15 | 56.9 | GDP-mannose 4,6 dehydratase |
XP_057766518.1 |
Pfam | PF13460 |
NAD_binding_10 | Domain | 16 | 150 | 1.2e-14 | 55.4 | NAD(P)H-binding |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。