Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002981`

染色体: Chr05 坐标: 36335858-36343342 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002981`
名称	SmilChr05G002981
描述	uncharacterized SmilChr05G002981
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	36335858 - 36343342 / `+`

ID 对照

NCBI Gene ID	`LOC130987030`
GeneID	`130987030`
locus_tag	`-`
NCBI Name	`LOC130987030`
原始查询	`LOC130987030`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Nucleotidyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:835458]; symbol=AT5G53770; hit=AT5G53770; species=arabidopsis; confidence=high
产物	Nucleotidyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:835458]; symbol=AT5G53770; hit=AT5G53770; species=arabidopsis; confidence=high
Arabidopsis	`AT5G53770` (AT5G53770) Nucleotidyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:835458] identity=61.3; qcov=0.89; evalue=0; confidence=high
Rice	`Os01g0672700` (OsNTP2) - identity=51.2; qcov=0.962; evalue=1.69e-164; confidence=high
GO	GO:0003729 (mRNA binding); GO:0005730 (nucleolus); GO:0031123 (RNA 3'-end processing); GO:0031499 (TRAMP complex); GO:1990817 (poly(A) RNA polymerase activity)
KEGG	smil03018 (RNA degradation - Salvia miltiorrhiza (redroot sage))
Pfam	PF01909 (NTP_transf_2); PF03828 (PAP_assoc); PF22600 (MTPAP-like_central)
InterPro	-
eggNOG	-
NR	GeneID:130987030

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057766572.1`
2	Chromosome	染色体	0.00000	`XP_057766572.1`
3	Centromere	着丝粒	0.00000	`XP_057766572.1`
4	Chromatin	染色质	0.00000	`XP_057766572.1`
5	Telomere	端粒	0.00000	`XP_057766572.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:36336068`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B69,B9,C5
`Chr5:36336276`	`A`	`ATC`	2bp_insertion	frameshift_variant	1	C82
`Chr5:36336276`	`A`	`ATC`	2bp_insertion	CDS_variant	1	C82
`Chr5:36336823`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B33,C75,C9
`Chr5:36342695`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B69,B9,C5
`Chr5:36342786`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B132,C32,C68
`Chr5:36342812`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C35
`Chr5:36342859`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B77
`Chr5:36342948`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B99
`Chr5:36342956`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766572.1

520 aa

260

520

MTPAP-like_central

NTP_transf_2

PAP_assoc

PF22600 MTPAP-like_central 114-241 aa PF01909 NTP_transf_2 146-230 aa PF03828 PAP_assoc 302-360 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766572.1`	Pfam	`PF22600`	MTPAP-like_central	Domain	114	241	8.3e-23	81.7	Poly(A) RNA polymerase, mitochondrial-like, central palm domain
`XP_057766572.1`	Pfam	`PF01909`	NTP_transf_2	Domain	146	230	2.5e-09	38.1	Nucleotidyltransferase domain
`XP_057766572.1`	Pfam	`PF03828`	PAP_assoc	Family	302	360	8.4e-14	52.3	Cid1 family poly A polymerase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057910589.1
ACACGAAACAGAAGCCAAAGTTCTTACGTCTGATTCTGAACTCTTGCAGTAGATTTGGTATTAGACACCCCTATTTGGAGTAGATTTGGCATTGTAAATAATAAAATCAGCATTCAAATAAAAGAATTTTTGAGGTTTCGGTCGCCCGTGCTGCGTATTGCAATGGAAAATAATGAGTTTGTCTACGAAACCCTAAGTTCCCTTGGCACCGACGAAACGCCCACCCCTCCGCCGCCGGCGTCTTCATCCTCCGAGATTGA...

CDS

1 records

下载 CDS FASTA

LOC130987030
ATGGAAAATAATGAGTTTGTCTACGAAACCCTAAGTTCCCTTGGCACCGACGAAACGCCCACCCCTCCGCCGCCGGCGTCTTCATCCTCCGAGATTGAACCGTACATTGTTTTGCGCAACCATATTTCGCTCTCCACTATCCAATATCCCTCTCCGGAATCCGCTGCTCCTGACTACTTCTCTCTCGACGTGAACGAGGCAGTAGATAACGAGACATCGATTTCATCGACTCCTCTGCCATCGCGCGAAGCCAGGAACAC...

Protein

1 records

下载 Protein FASTA

XP_057766572.1
MENNEFVYETLSSLGTDETPTPPPPASSSSEIEPYIVLRNHISLSTIQYPSPESAAPDYFSLDVNEAVDNETSISSTPLPSREARNTSSAASDRTLEGNWFRANSRFKSPMLRLHKEILDFCDFLSPTAEEQESRTTAIKSVFDVINYIWPNAVAEVFGSFETGLYLPSSDIDVVILGSNVRSPQIGLQALSRALSQRGIAKKMQVIAKARVPIIKFVEKKSGFAFDISFDVHNGPKAAEFIKDAVSRWPPLKPLCLILK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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