Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G003554

染色体: Chr05 坐标: 47437199-47445380 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G003554
名称SmilChr05G003554
描述protein ENHANCED DISEASE RESISTANCE 2-like
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向47437199 - 47445380 / -

ID 对照

NCBI Gene IDLOC130987052
GeneID130987052
locus_tag-
NCBI NameLOC130987052
原始查询LOC130987052

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述protein ENHANCED DISEASE RESISTANCE 2-like
产物protein ENHANCED DISEASE RESISTANCE 2-like
ArabidopsisAT4G19040 (EDR2)
ENHANCED DISEASE RESISTANCE 2 [Source:NCBI gene (formerly Entrezgene);Acc:827642]
identity=71.1; qcov=1.01; evalue=0; confidence=high
RiceOs02g0102800 (B1370C05.34-1)
-
identity=58.5; qcov=1.01; evalue=0; confidence=high
GOGO:0008289 (lipid binding)
KEGG-
PfamPF01852 (START); PF07059 (EDR2_C)
InterPro-
eggNOG-
NRGeneID:130987052

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 0.40000 XP_057766592.1
2 Golgi apparatus 高尔基体 0.40000 XP_057766592.1
3 Cytosol 细胞质基质 0.20000 XP_057766592.1
4 Nucleus 细胞核 0.00000 XP_057766592.1
5 Chromosome 染色体 0.00000 XP_057766592.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:47437556 G A EMS_canonical_SNV CDS_variant 5 A11,B29,B73,C72,D8
Chr5:47437559 G A EMS_canonical_SNV CDS_variant 1 B101
Chr5:47437571 C T EMS_canonical_SNV CDS_variant 2 B34,C13
Chr5:47437586 C T EMS_canonical_SNV CDS_variant 4 A11,B29,B73,C72
Chr5:47437883 C T EMS_canonical_SNV CDS_variant 1 D6
Chr5:47438043 G A EMS_canonical_SNV CDS_variant 3 B132,B79,C39
Chr5:47438967 C T EMS_canonical_SNV CDS_variant 1 C9
Chr5:47439377 C T EMS_canonical_SNV CDS_variant 3 B22,C62,C72
Chr5:47439386 C T EMS_canonical_SNV stop_gained 17 B101,B107,B121,B29,B32,B40,B44,B73,C18,C29,C36,C48,C72,C77,C87,D2,D8
Chr5:47439426 C T EMS_canonical_SNV CDS_variant 5 B16,B6,C39,C56,C67
Chr5:47439647 C T EMS_canonical_SNV CDS_variant 2 A11,A3
Chr5:47439658 C T EMS_canonical_SNV CDS_variant 1 C57

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057766592.1
615 aa
N
1
308
615
START
EDR2_C
C
PF01852 START 131-286 aa PF07059 EDR2_C 398-602 aa
XP_057766593.1
614 aa
N
1
307
614
START
EDR2_C
C
PF01852 START 130-285 aa PF07059 EDR2_C 397-601 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057766592.1 Pfam PF01852 START Domain 131 286 2.5e-23 83.2 START domain
XP_057766592.1 Pfam PF07059 EDR2_C Domain 398 602 1.2e-71 241.7 Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
XP_057766593.1 Pfam PF01852 START Domain 130 285 2.5e-23 83.3 START domain
XP_057766593.1 Pfam PF07059 EDR2_C Domain 397 601 1.2e-71 241.7 Protein ENHANCED DISEASE RESISTANCE 2, C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057910609.1
AGTACCCAAATTATGAGAATCTATGCAAATCTATCGCCAAATAAATTTTTCGGTACTTGAAAGCTGAGTAGGACGGACTGAATAAGATCCAATGACAGATGATGTTTACAACAGAACAACTTCATGTGGTGCTAATTCGTGGTGCATTCCTTTCAAAAGAATGACTGTGATGGTCCTAGTCATGCGGTACTCAATCTTGAAAGTAGAGTAAGGCTGGCTGATTCTAGCCTTCGATCGGCTTTCAAGCAAAACAAAGATAG...
XM_057910610.1
GTACCCAAATTATGAGAATCTATGCAAATCTATCGCCAAATAAATTTTTCGGTACTTGAAAGCTGAGTAGGACGGACTGAATAAGATCCAATGACAGATGATGTTTACAACAGAACAACTTCATGTGGTGCTAATTCGTGGTGCATTCCTTTCAAAAGAATGACTGTGATGGTCCTAGTCATGCGGTACTCAATCTTGAAAGTAGAGTAAGGCTGGCTGATTCTAGCCTTCGATCGGCTTTCAAGCAAAACAAAGATAGA...

CDS

2 records

下载 CDS FASTA
LOC130987052
ATGGCAGCTTACAGCATTCAGGAGGCCCTCAGTTGGAAAGAAAAACTTGAATCTATTATTGATCAGCAAGGGGCACATTCTACTCATGGTAACAAGTACTATTCTTTTGAGTATAGATATGGCTTGGATAATGGGAGAAATGCTTCATCATCAGACCGTGATGCTGCAGAAGATGATGATGATGATTGTCGCCCAGATTCTCCACACAGAACGATAGGAAATGGTCCCCCTGAATCTGTTTTAGACTGGACAGATGAATT...
LOC130987052
ATGGCAGCTTACAGCATTCAGGAGGCCCTCAGTTGGAAAGAAAAACTTGAATCTATTATTGATCAGCAGCAAGGGGCACATTCTACTCATGGTAACAAGTACTATTCTTTTGAGTATAGATATGGCTTGGATAATGGGAGAAATGCTTCATCATCAGACCGTGATGCTGCAGAAGATGATGATGATGATTGTCGCCCAGATTCTCCACACAGAACGATAGGAAATGGTCCCCCTGAATCTGTTTTAGACTGGACAGATGA...

Protein

2 records

下载 Protein FASTA
XP_057766592.1
MAAYSIQEALSWKEKLESIIDQQQGAHSTHGNKYYSFEYRYGLDNGRNASSSDRDAAEDDDDDCRPDSPHRTIGNGPPESVLDWTDELDSNLPNQNYNSRAFSRKHWRLLQCQNGLRIFEELLEVDLLPKSCSKAMKVVGIVEATCEETFELIMRMDATRCEWDCSFQYGSLVEEVDGHTAILYQRLQLDWFSMFVWPRDLCYVRYWRRNDDGTYVVLFRSREHESCGRQPGYVRAHIESGGFNISRLKPRGGRPRTKVQ...
XP_057766593.1
MAAYSIQEALSWKEKLESIIDQQGAHSTHGNKYYSFEYRYGLDNGRNASSSDRDAAEDDDDDCRPDSPHRTIGNGPPESVLDWTDELDSNLPNQNYNSRAFSRKHWRLLQCQNGLRIFEELLEVDLLPKSCSKAMKVVGIVEATCEETFELIMRMDATRCEWDCSFQYGSLVEEVDGHTAILYQRLQLDWFSMFVWPRDLCYVRYWRRNDDGTYVVLFRSREHESCGRQPGYVRAHIESGGFNISRLKPRGGRPRTKVQH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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