Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002804`

染色体: Chr01 坐标: 46579095-46593636 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002804`
名称	SmilChr01G002804
描述	myosin-17-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	46579095 - 46593636 / `+`

ID 对照

NCBI Gene ID	`LOC130987055`
GeneID	`130987055`
locus_tag	`-`
NCBI Name	`LOC130987055`
原始查询	`LOC130987055`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	myosin-17-like
产物	myosin-17-like
Arabidopsis	`AT5G20490` (XIK) myosin family protein with Dil [Source:NCBI gene (formerly Entrezgene);Acc:832171] identity=80.5; qcov=1; evalue=0; confidence=high
Rice	`Os03g0686300` - identity=78.8; qcov=0.995; evalue=0; confidence=high
GO	GO:0000146 (microfilament motor activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0007015 (actin filament organization); GO:0015629 (actin cytoskeleton); GO:0016459 (myosin complex); GO:0030050 (vesicle transport along actin filament); GO:0031982 (vesicle); GO:0051015 (actin filament binding)
KEGG	smil04814 (Motor proteins - Salvia miltiorrhiza (redroot sage))
Pfam	PF00063 (Myosin_head); PF00612 (IQ); PF01843 (DIL); PF02736 (Myosin_N)
InterPro	-
eggNOG	-
NR	GeneID:130987055

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057766603.1`
2	Cell membrane	细胞膜	0.60000	`XP_057766603.1`
3	Phragmoplast	Phragmoplast	0.20000	`XP_057766603.1`
4	Nucleus	细胞核	0.00000	`XP_057766603.1`
5	Chromosome	染色体	0.00000	`XP_057766603.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:46582264`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr1:46582821`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:46583697`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr1:46584558`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr1:46585341`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B76,C62,D7
`Chr1:46586325`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B119,C33
`Chr1:46586385`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr1:46586797`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr1:46587333`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr1:46587360`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B33,B66,C19,C43,D11
`Chr1:46587445`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr1:46587456`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B127

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766603.1

1532 aa

766

1532

Myosin_N

Myosin_head

DIL

PF02736 Myosin_N 6-55 aa PF00063 Myosin_head 65-720 aa PF00612 IQ 737-755 aa PF00612 IQ 759-778 aa PF00612 IQ 785-804 aa PF00612 IQ 856-875 aa PF01843 DIL 1349-1453 aa

XP_057766614.1

1532 aa

766

1532

Myosin_N

Myosin_head

DIL

PF02736 Myosin_N 6-55 aa PF00063 Myosin_head 65-720 aa PF00612 IQ 737-755 aa PF00612 IQ 759-778 aa PF00612 IQ 785-804 aa PF00612 IQ 856-875 aa PF01843 DIL 1349-1453 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766603.1`	Pfam	`PF02736`	Myosin_N	Domain	6	55	6.4e-10	39.3	Myosin N-terminal SH3-like domain
`XP_057766603.1`	Pfam	`PF00063`	Myosin_head	Domain	65	720	9.8e-257	854.3	Myosin head (motor domain)
`XP_057766603.1`	Pfam	`PF00612`	IQ	Motif	737	755	2.5e-16	58.6	IQ calmodulin-binding motif
`XP_057766603.1`	Pfam	`PF00612`	IQ	Motif	759	778	2.5e-16	58.6	IQ calmodulin-binding motif
`XP_057766603.1`	Pfam	`PF00612`	IQ	Motif	785	804	2.5e-16	58.6	IQ calmodulin-binding motif
`XP_057766603.1`	Pfam	`PF00612`	IQ	Motif	856	875	2.5e-16	58.6	IQ calmodulin-binding motif
`XP_057766603.1`	Pfam	`PF01843`	DIL	Repeat	1349	1453	1.1e-29	103.4	DIL domain
`XP_057766614.1`	Pfam	`PF02736`	Myosin_N	Domain	6	55	6.4e-10	39.3	Myosin N-terminal SH3-like domain
`XP_057766614.1`	Pfam	`PF00063`	Myosin_head	Domain	65	720	9.8e-257	854.3	Myosin head (motor domain)
`XP_057766614.1`	Pfam	`PF00612`	IQ	Motif	737	755	2.5e-16	58.6	IQ calmodulin-binding motif
`XP_057766614.1`	Pfam	`PF00612`	IQ	Motif	759	778	2.5e-16	58.6	IQ calmodulin-binding motif
`XP_057766614.1`	Pfam	`PF00612`	IQ	Motif	785	804	2.5e-16	58.6	IQ calmodulin-binding motif
`XP_057766614.1`	Pfam	`PF00612`	IQ	Motif	856	875	2.5e-16	58.6	IQ calmodulin-binding motif
`XP_057766614.1`	Pfam	`PF01843`	DIL	Repeat	1349	1453	1.1e-29	103.4	DIL domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057910620.1
CGTCATTTTGTCCGTGCGTGTGGGACTCCACGAACCTCTCTCCCTTGTCCTAACAACATAGAAACTATAAACATTATCACGCAAAGAAGAAATTTCAAAAAAATTGCTCTCAGATAAATTTCAAAACGAACAAACTAACACAGGGAGAGAAAACAAACTCAACCAAATTCCTCAAGAGAGAGACAGGTTAGACTGTGACGACGACAAATCCCACCGTTCTCTCTCAATTTGTATTTTGCTTATTTTGTTGGATTTGGTGG...

XM_057910631.1
CACGAACCTCTCTCCCTTGTCCTAACAACATAGAAACTATAAACATTATCACGCAAAGAAGAAATTTCAAAAAAATTGCTCTCAGATAAATTTCAAAACGAACAAACTAACACAGGGAGAGAAAACAAACTCAACCAAATTCCTCAAGAGAGAGACAGAAGAAGTTGTTGAGTTGATAGCCGGAAGAGCTAAAGTTGTGTTTGAATTTCAATAGTTGGCGACTCGAAGTTGGAGCTGATCTGACTCAGTGAGTCAAAGCT...

CDS

2 records

下载 CDS FASTA

LOC130987055
ATGGCATCATTAGTTAACATTATAGTGGGTTCTCATGTATGGGTTGAGGATCCAGTGTTGGCATGGATTGATGGAGAAGTAAAACGGATAGATGGCCAAGATGTTCATGTTCAAACTACAAATGGGAAAAAGGTTGTTGCAAATATCACAAGAGTGTTTCCCAAGGACACAGAAGCACCACCCGGAGGTGAGGATGACATGACTAAGCTTTCATATTTGCACGAACCTGGTGTCCTACAAAACCTGGCTACTAGATATGA...

Protein

2 records

下载 Protein FASTA

XP_057766603.1
MASLVNIIVGSHVWVEDPVLAWIDGEVKRIDGQDVHVQTTNGKKVVANITRVFPKDTEAPPGGEDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAALGELSPHVFAIGDVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAIRTYLLERSRVCQISDPERNYHCFYLL...

XP_057766614.1
MASLVNIIVGSHVWVEDPVLAWIDGEVKRIDGQDVHVQTTNGKKVVANITRVFPKDTEAPPGGEDDMTKLSYLHEPGVLQNLATRYELNEIYTYTGNILIAINPFQRLPHLYDTHMMEQYKGAALGELSPHVFAIGDVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAIRTYLLERSRVCQISDPERNYHCFYLL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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