Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003560`

染色体: Chr05 坐标: 47531610-47534303 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003560`
名称	SmilChr05G003560
描述	uncharacterized SmilChr05G003560
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	47531610 - 47534303 / `+`

ID 对照

NCBI Gene ID	`LOC130987061`
GeneID	`130987061`
locus_tag	`-`
NCBI Name	`LOC130987061`
原始查询	`LOC130987061`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	plant viral-response family protein [Source:NCBI gene (formerly Entrezgene);Acc:28717288]; symbol=AT1G32127; hit=AT1G32127; species=arabidopsis; confidence=high
产物	plant viral-response family protein [Source:NCBI gene (formerly Entrezgene);Acc:28717288]; symbol=AT1G32127; hit=AT1G32127; species=arabidopsis; confidence=high
Arabidopsis	`AT1G32127` (AT1G32127) plant viral-response family protein [Source:NCBI gene (formerly Entrezgene);Acc:28717288] identity=70.7; qcov=0.926; evalue=1.06e-139; confidence=high
Rice	`Os11g0621000` - identity=56.2; qcov=0.972; evalue=5.29e-102; confidence=high
GO	-
KEGG	-
Pfam	PF04819 (DUF716)
InterPro	-
eggNOG	-
NR	GeneID:130987061

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.60000	`XP_057766613.1`
2	Golgi apparatus	高尔基体	0.20000	`XP_057766613.1`
3	Vacuole	液泡	0.20000	`XP_057766613.1`
4	Vacuole membrane	液泡膜	0.20000	`XP_057766613.1`
5	Nucleus	细胞核	0.00000	`XP_057766613.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:47533960`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A2,B28,B70,B82,C78
`Chr5:47534003`	`C`	`CA`	1bp_insertion	frameshift_variant	4	A6,B24,B80,B91
`Chr5:47534003`	`C`	`CA`	1bp_insertion	CDS_variant	4	A6,B24,B80,B91

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766613.1

284 aa

142

284

DUF716

PF04819 DUF716 123-253 aa

XP_057766615.1

284 aa

142

284

DUF716

PF04819 DUF716 123-253 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766613.1`	Pfam	`PF04819`	DUF716	Family	123	253	3.3e-42	144.1	Family of unknown function (DUF716)
`XP_057766615.1`	Pfam	`PF04819`	DUF716	Family	123	253	3.3e-42	144.1	Family of unknown function (DUF716)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057910632.1
GAAATATTAGTTTCTCAAAATAAGACAGTCTACCCAAAATAGAAGTGACAAAAGGGGAAAAAAATCATTATATCAACTTCATAAACTGTGCGAAGCTGCATGCCATCATTTCCATGCAGCAACACACGAACAAATGGCCAATCAAAGTAGTGGGAAGAAAAGTCCACTTTTTCTCGATGCTGCACTTCTAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGGAAGAATCATATAAAAAACTACAGCTAGATTTCTGCATTCA...

XM_057910630.1
AAGCTGCATGCCATCATTTCCATGCAGCAACACACGAACAAATGGCCAATCAAAGTAGTGGGAAGAAAAGTCCACTTTTTCTCGATGCTGCACTTCTAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGGAAGAATCATATAAAAAACTACAGCTAGATTTCTGCATTCAATGATGCCTTTATTATTGCCGTCTGAGTTTGACCCCACCGAACTCTCTTCAATTCCTGTCTACCTTCTTCTCTTTCTAATAAAGGCCCTTTG...

CDS

2 records

下载 CDS FASTA

LOC130987061
ATGGGTTCATTTCCAGGGCATGCAATTCCTGGGACATTGTTTCTAGTCATTGGTGTGTGGCACATGTGGTGCTCTCTAATCAGATATGCATCAAATCCTAAATCTTTCCAAGTCAGGGTTTGGAACCCTGTTCCTGGCTTTGATGGTAGGCTTAAATACTTGGAGCTCTATGTGATTGCAATCGGAGCTTTCTTCGATCTATGCATAGAGTTTCTGTATTCGACCCATCTCAAGATCGTTGTTCATGGAGTCTTGAACCC...

Protein

2 records

下载 Protein FASTA

XP_057766613.1
MGSFPGHAIPGTLFLVIGVWHMWCSLIRYASNPKSFQVRVWNPVPGFDGRLKYLELYVIAIGAFFDLCIEFLYSTHLKIVVHGVLNPSHMNDFEHSGMLLMFFIFGVVALLSEKTSYLPLPEGALCFVASAAFTAEYILFYFHSTTHMGLEGWYHFILVLLIGLCILSTVAGALMPTSFPADLCSGMAMTLQGLWFYQTAFTLYGSMMPDGCLLKDNEVKCRSTEHEIRGELLANFQLFVQVFSVLVAVAGAYIYIEPKY...

XP_057766615.1
MGSFPGHAIPGTLFLVIGVWHMWCSLIRYASNPKSFQVRVWNPVPGFDGRLKYLELYVIAIGAFFDLCIEFLYSTHLKIVVHGVLNPSHMNDFEHSGMLLMFFIFGVVALLSEKTSYLPLPEGALCFVASAAFTAEYILFYFHSTTHMGLEGWYHFILVLLIGLCILSTVAGALMPTSFPADLCSGMAMTLQGLWFYQTAFTLYGSMMPDGCLLKDNEVKCRSTEHEIRGELLANFQLFVQVFSVLVAVAGAYIYIEPKY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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