当前解析结果
SmilChr01G002805| 统一新 Gene ID | SmilChr01G002805 |
|---|---|
| 名称 | SmilChr01G002805 |
| 描述 | vacuolar protein sorting-associated protein 52 A |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 46593847 - 46601851 / + |
| NCBI Gene ID | LOC130987064 |
|---|---|
| GeneID | 130987064 |
| locus_tag | - |
| NCBI Name | LOC130987064 |
| 原始查询 | LOC130987064 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | vacuolar protein sorting-associated protein 52 A |
| 产物 | vacuolar protein sorting-associated protein 52 A |
| Arabidopsis | AT1G71270 (POK)Vps52 / Sac2 family [Source:NCBI gene (formerly Entrezgene);Acc:843468] identity=75.6; qcov=0.973; evalue=0; confidence=high |
| Rice | Os03g0417900 (OSJNBb0028K20.3)- identity=73.2; qcov=0.986; evalue=0; confidence=high |
| GO | GO:0000938 (GARP complex); GO:0006896 (Golgi to vacuole transport); GO:0019905 (syntaxin binding); GO:0032456 (endocytic recycling); GO:0042147 (retrograde transport, endosome to Golgi) |
| KEGG | - |
| Pfam | PF04129 (Vps52_CC); PF09763 (Sec3_CC); PF20655 (Vps52_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987064 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Trans-golgi network | Trans-golgi network | 0.80000 | XP_057766628.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057766628.1 |
| 3 | Golgi apparatus | 高尔基体 | 0.60000 | XP_057766628.1 |
| 4 | Cytoplasmic vesicle | 细胞质囊泡 | 0.40000 | XP_057766628.1 |
| 5 | Clathrin-coated vesicle | Clathrin-coated vesicle | 0.40000 | XP_057766628.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:46594262 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B112,B14,B15,C26 |
Chr1:46594268 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B106,B131 |
Chr1:46594661 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B80 |
Chr1:46596121 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C49 |
Chr1:46596287 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B23,C53 |
Chr1:46596325 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr1:46596350 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr1:46596371 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr1:46597976 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C35,C70,D9 |
Chr1:46599123 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C35,C70 |
Chr1:46599171 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,B73 |
Chr1:46599180 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B23,C53 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057766628.1PF09763
Sec3_CC 72-190 aa
PF04129
Vps52_CC 90-263 aa
PF20655
Vps52_C 280-582 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057766628.1 |
Pfam | PF09763 |
Sec3_CC | Repeat | 72 | 190 | 1e-06 | 29.3 | Exocyst complex component Sec3, coiled-coil |
XP_057766628.1 |
Pfam | PF04129 |
Vps52_CC | Repeat | 90 | 263 | 5e-59 | 199.6 | Vps52/Sac2 family, coiled-coil |
XP_057766628.1 |
Pfam | PF20655 |
Vps52_C | Repeat | 280 | 582 | 4.9e-115 | 384.9 | Vps52, C-terminal |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。