Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003600`

染色体: Chr05 坐标: 48091623-48093640 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003600`
名称	SmilChr05G003600
描述	uncharacterized SmilChr05G003600
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	48091623 - 48093640 / `-`

ID 对照

NCBI Gene ID	`LOC130987095`
GeneID	`130987095`
locus_tag	`-`
NCBI Name	`LOC130987095`
原始查询	`LOC130987095`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:827653]; symbol=AT4G19150; hit=AT4G19150; species=arabidopsis; confidence=high
产物	Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:827653]; symbol=AT4G19150; hit=AT4G19150; species=arabidopsis; confidence=high
Arabidopsis	`AT4G19150` (AT4G19150) Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:827653] identity=51.8; qcov=0.95; evalue=1.86e-75; confidence=high
Rice	`Os10g0580700` (NALP1) - identity=51; qcov=0.934; evalue=2.45e-71; confidence=high
GO	GO:0000976 (transcription cis-regulatory region binding); GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0045944 (positive regulation of transcription by RNA polymerase II)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5)
InterPro	-
eggNOG	-
NR	GeneID:130987095

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057766689.1`
2	Nucleolus	核仁	0.20000	`XP_057766689.1`
3	Chromosome	染色体	0.00000	`XP_057766689.1`
4	Centromere	着丝粒	0.00000	`XP_057766689.1`
5	Chromatin	染色质	0.00000	`XP_057766689.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:48091849`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B45
`Chr5:48091858`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr5:48091879`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:48091943`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B24,C2
`Chr5:48092040`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B17,B33,C5,C77
`Chr5:48092148`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C25
`Chr5:48092375`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B119,C80
`Chr5:48092427`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	C35
`Chr5:48092427`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C35
`Chr5:48092432`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B119,C80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766689.1

258 aa

129

258

Ank_2

Ank_4

Ank_5

Ank_3

Ank

Ank_4

Ank_2

Ank_5

Ank_3

Ank

PF12796 Ank_2 13-74 aa PF13637 Ank_4 17-66 aa PF13857 Ank_5 37-74 aa PF13606 Ank_3 47-73 aa PF00023 Ank 48-75 aa PF00023 Ank 83-110 aa PF13637 Ank_4 84-133 aa PF12796 Ank_2 84-166 aa PF13857 Ank_5 110-153 aa PF13606 Ank_3 113-140 aa PF00023 Ank 113-144 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766689.1`	Pfam	`PF12796`	Ank_2	Repeat	13	74	1.6e-30	106.2	Ankyrin repeats (3 copies)
`XP_057766689.1`	Pfam	`PF13637`	Ank_4	Repeat	17	66	7.4e-24	84.0	Ankyrin repeats (many copies)
`XP_057766689.1`	Pfam	`PF13857`	Ank_5	Repeat	37	74	8.4e-26	90.5	Ankyrin repeats (many copies)
`XP_057766689.1`	Pfam	`PF13606`	Ank_3	Repeat	47	73	1.3e-17	62.5	Ankyrin repeat
`XP_057766689.1`	Pfam	`PF00023`	Ank	Repeat	48	75	1.5e-28	97.9	Ankyrin repeat
`XP_057766689.1`	Pfam	`PF00023`	Ank	Repeat	83	110	1.5e-28	97.9	Ankyrin repeat
`XP_057766689.1`	Pfam	`PF13637`	Ank_4	Repeat	84	133	7.4e-24	84.0	Ankyrin repeats (many copies)
`XP_057766689.1`	Pfam	`PF12796`	Ank_2	Repeat	84	166	1.6e-30	106.2	Ankyrin repeats (3 copies)
`XP_057766689.1`	Pfam	`PF13857`	Ank_5	Repeat	110	153	8.4e-26	90.5	Ankyrin repeats (many copies)
`XP_057766689.1`	Pfam	`PF13606`	Ank_3	Repeat	113	140	1.3e-17	62.5	Ankyrin repeat
`XP_057766689.1`	Pfam	`PF00023`	Ank	Repeat	113	144	1.5e-28	97.9	Ankyrin repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057910706.1
ATGGGGAAAAAGCCTTCTGCGGCGAGTGCTAGCTCCGGTGATGAAGAGCTGCACGCGGCGGCGCGATCGGGGGACCTGAAGGCGGTGCAGGCGATATGCAGCACCAATCCTCTCGCTGTCAACTCGCGCGACAGGCACTCCCGTACGCCGCTACACCTAGCGGCATGGGCAGGGCATTCTGAAGTCGTAAACTATCTTTGTAAGAACAAGGCCGATGTCGGTGCTGCTGCCATGGATGACATGGGTGCAATTCACTTTGC...

CDS

1 records

下载 CDS FASTA

LOC130987095
ATGGGGAAAAAGCCTTCTGCGGCGAGTGCTAGCTCCGGTGATGAAGAGCTGCACGCGGCGGCGCGATCGGGGGACCTGAAGGCGGTGCAGGCGATATGCAGCACCAATCCTCTCGCTGTCAACTCGCGCGACAGGCACTCCCGTACGCCGCTACACCTAGCGGCATGGGCAGGGCATTCTGAAGTCGTAAACTATCTTTGTAAGAACAAGGCCGATGTCGGTGCTGCTGCCATGGATGACATGGGTGCAATTCACTTTGC...

Protein

1 records

下载 Protein FASTA

XP_057766689.1
MGKKPSAASASSGDEELHAAARSGDLKAVQAICSTNPLAVNSRDRHSRTPLHLAAWAGHSEVVNYLCKNKADVGAAAMDDMGAIHFAAQKGHVDVVKILLTSGVSVKSCNRKGMTALHYAAQGSNVEFINYLLKKGANKNMKNKAGKTAVDLASSEEIRKLLLGYEPSSQRVVSNGNEKDEKAETKTASAEEVVEGSESGAAVQGDEGGEEGKDESLKRKNGDSNEENQQGAKKSKVALGHLLAEDDIPEEEEEEEDR

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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