当前解析结果
SmilChr05G003602| 统一新 Gene ID | SmilChr05G003602 |
|---|---|
| 名称 | SmilChr05G003602 |
| 描述 | probable polyamine transporter At1g31830 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 48098269 - 48104403 / - |
| NCBI Gene ID | LOC130987096 |
|---|---|
| GeneID | 130987096 |
| locus_tag | - |
| NCBI Name | LOC130987096 |
| 原始查询 | LOC130987096 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable polyamine transporter At1g31830 |
| 产物 | probable polyamine transporter At1g31830 |
| Arabidopsis | AT1G31830 (PUT2)Amino acid permease family protein [Source:NCBI gene (formerly Entrezgene);Acc:840073] identity=74.5; qcov=0.942; evalue=0; confidence=high |
| Rice | Os03g0576900 (OsPUT3)- identity=68.7; qcov=0.971; evalue=0; confidence=high |
| GO | GO:0016020 (membrane); GO:0022857 (transmembrane transporter activity); GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF00324 (AA_permease); PF13520 (AA_permease_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987096 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vesicle | 囊泡 | 1.00000 | XP_057766690.1 |
| 2 | Cell membrane | 细胞膜 | 0.80000 | XP_057766690.1 |
| 3 | Cytoplasmic vesicle | 细胞质囊泡 | 0.60000 | XP_057766690.1 |
| 4 | Lysosome membrane | 溶酶体膜 | 0.60000 | XP_057766690.1 |
| 5 | Endosome | 内体 | 0.60000 | XP_057766690.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:48098837 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B119,C80 |
Chr5:48099116 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B4,B64,C1,C43,C76 |
Chr5:48099275 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B65,D10 |
Chr5:48099314 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr5:48099334 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A18,C1,C43,C76,D11 |
Chr5:48099336 |
G |
GT |
1bp_insertion | frameshift_variant | 3 | B14,B26,C37 |
Chr5:48099336 |
G |
GT |
1bp_insertion | CDS_variant | 3 | B14,B26,C37 |
Chr5:48099413 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A1,B133,B72 |
Chr5:48099449 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr5:48099503 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr5:48099518 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B104,B47,B55,C56,C65 |
Chr5:48100530 |
AGT |
A |
2bp_deletion | frameshift_variant | 2 | B140,B22 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057766690.1PF13520
AA_permease_2 81-479 aa
PF00324
AA_permease 103-473 aa
XP_057766691.1PF13520
AA_permease_2 69-467 aa
PF00324
AA_permease 91-461 aa
XP_057766692.1PF13520
AA_permease_2 69-467 aa
PF00324
AA_permease 91-461 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057766690.1 |
Pfam | PF13520 |
AA_permease_2 | Family | 81 | 479 | 6.1e-37 | 128.2 | Amino acid permease |
XP_057766690.1 |
Pfam | PF00324 |
AA_permease | Domain | 103 | 473 | 4.5e-19 | 69.2 | Amino acid permease |
XP_057766691.1 |
Pfam | PF13520 |
AA_permease_2 | Family | 69 | 467 | 5.6e-37 | 128.4 | Amino acid permease |
XP_057766691.1 |
Pfam | PF00324 |
AA_permease | Domain | 91 | 461 | 4.1e-19 | 69.3 | Amino acid permease |
XP_057766692.1 |
Pfam | PF13520 |
AA_permease_2 | Family | 69 | 467 | 5.6e-37 | 128.4 | Amino acid permease |
XP_057766692.1 |
Pfam | PF00324 |
AA_permease | Domain | 91 | 461 | 4.1e-19 | 69.3 | Amino acid permease |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。