Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003607`

染色体: Chr05 坐标: 48140225-48143770 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003607`
名称	SmilChr05G003607
描述	uncharacterized SmilChr05G003607
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	48140225 - 48143770 / `-`

ID 对照

NCBI Gene ID	`LOC130987098`
GeneID	`130987098`
locus_tag	`-`
NCBI Name	`LOC130987098`
原始查询	`LOC130987098`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Ribonuclease P protein subunit P38-like protein [Source:NCBI gene (formerly Entrezgene);Acc:823733]; symbol=AT3G45900; hit=AT3G45900; species=arabidopsis; confidence=high
产物	Ribonuclease P protein subunit P38-like protein [Source:NCBI gene (formerly Entrezgene);Acc:823733]; symbol=AT3G45900; hit=AT3G45900; species=arabidopsis; confidence=high
Arabidopsis	`AT3G45900` (AT3G45900) Ribonuclease P protein subunit P38-like protein [Source:NCBI gene (formerly Entrezgene);Acc:823733] identity=52.5; qcov=0.947; evalue=1.2e-121; confidence=high
Rice	`Os03g0853600` - identity=66.3; qcov=0.475; evalue=7.98e-93; confidence=medium
GO	-
KEGG	-
Pfam	PF28715 (DUF8445)
InterPro	-
eggNOG	-
NR	GeneID:130987098

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057766694.1`
2	Nucleus	细胞核	0.60000	`XP_057766694.1`
3	Nucleus membrane	核膜	0.40000	`XP_057766694.1`
4	Chromosome	染色体	0.00000	`XP_057766694.1`
5	Centromere	着丝粒	0.00000	`XP_057766694.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:48140510`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B138,B41,B60,B79
`Chr5:48140647`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C53
`Chr5:48143066`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B138,B60,B79
`Chr5:48143255`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B37,C38
`Chr5:48143424`	`GA`	`G`	1bp_deletion	frameshift_variant	5	B22,B83,C10,C52,C84
`Chr5:48143424`	`GA`	`G`	1bp_deletion	CDS_variant	5	B22,B83,C10,C52,C84
`Chr5:48143428`	`GAA`	`G`	2bp_deletion	frameshift_variant	5	B22,B83,C10,C52,C84
`Chr5:48143428`	`GAA`	`G`	2bp_deletion	CDS_variant	5	B22,B83,C10,C52,C84
`Chr5:48143441`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B60

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766694.1

438 aa

219

438

DUF8445

PF28715 DUF8445 257-436 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766694.1`	Pfam	`PF28715`	DUF8445	Repeat	257	436	2.9e-96	321.1	Domain of unknown function (DUF8445)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057910711.1
AACTGAAAAGAAAAAATAAATAAAAGAGTGAAGAAAGGCCAAAAATGACACACAGTAAGTACACACACTCCAACCCAGTGAAAAAAACCAACTACCCACAAAACACCATAAATCCACACACAAGCACAGACAAAGAAAGAAACAAAAATTGGAGCAATGGCTGCCCAAGAACAACAAGAAGAAGATATCCATGAAACCCAACACCAACAAATCCTCCCTTTCGAAGACCACTTCGCCGAGCTCCTCTCCACATATCTGGG...

CDS

1 records

下载 CDS FASTA

LOC130987098
ATGGCTGCCCAAGAACAACAAGAAGAAGATATCCATGAAACCCAACACCAACAAATCCTCCCTTTCGAAGACCACTTCGCCGAGCTCCTCTCCACATATCTGGGCCTCAGCTTCACAATCTTTCTGGGATTATTACCCAAGAACTCAATCCCATTAATCTCCACATACCAAACCCAGAACAAACTTCTCTCCTTTAAGCTCATGCAAGCGGAGGAGCAGCTGAAGCAGCTCCACTCGAGAAGAAAAGAGGATTCCAAGGC...

Protein

1 records

下载 Protein FASTA

XP_057766694.1
MAAQEQQEEDIHETQHQQILPFEDHFAELLSTYLGLSFTIFLGLLPKNSIPLISTYQTQNKLLSFKLMQAEEQLKQLHSRRKEDSKANARVVEIFASHRHAWQQEEKRLLQQIDECNEEIAFLKSKVEDFEGVEAEFKASIEDLKREVSEREEMLSFMSRSNCESGGECYGDMGLSYAGKAGVSERVEEDCFNGGGVDEMASVYAQTHTHTGFTSDFLNSAASKYWSDKATLWQDMQQYEPVESVYHVKHFVSRRESPWK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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