当前解析结果
SmilChr01G000761| 统一新 Gene ID | SmilChr01G000761 |
|---|---|
| 名称 | SmilChr01G000761 |
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 16675316 - 16676503 / - |
| NCBI Gene ID | LOC130987123 |
|---|---|
| GeneID | 130987123 |
| locus_tag | - |
| NCBI Name | LOC130987123 |
| 原始查询 | LOC130987123 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 产物 | protein FAR1-RELATED SEQUENCE 5-like |
| Arabidopsis | AT4G38180 (FRS5)FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=25.6; qcov=0.919; evalue=2.87e-37; confidence=low |
| Rice | Os06g0166100- identity=32.7; qcov=0.813; evalue=3.17e-52; confidence=low |
| GO | GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987123 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057766759.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057766759.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057766759.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057766759.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057766759.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:16675327 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C35 |
Chr1:16675388 |
C |
CT |
1bp_insertion | frameshift_variant | 5 | A22,C34,C63,C67,D4 |
Chr1:16675388 |
C |
CT |
1bp_insertion | CDS_variant | 5 | A22,C34,C63,C67,D4 |
Chr1:16675414 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A16,B29 |
Chr1:16675420 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A10,D1 |
Chr1:16675442 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A8,B117,B46,C24,C61 |
Chr1:16675489 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A10 |
Chr1:16675703 |
C |
T |
EMS_canonical_SNV | stop_gained | 4 | A1,A16,A6,C20 |
Chr1:16675703 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A1,A16,A6,C20 |
Chr1:16675832 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B105,B16 |
Chr1:16675949 |
A |
AC |
1bp_insertion | frameshift_variant | 1 | B71 |
Chr1:16675949 |
A |
AC |
1bp_insertion | CDS_variant | 1 | B71 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。