当前解析结果
SmilChr05G003673| 统一新 Gene ID | SmilChr05G003673 |
|---|---|
| 名称 | SmilChr05G003673 |
| 描述 | abscisic acid 8'-hydroxylase CYP707A2-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 49720202 - 49727911 / + |
| NCBI Gene ID | LOC130987154 |
|---|---|
| GeneID | 130987154 |
| locus_tag | - |
| NCBI Name | LOC130987154 |
| 原始查询 | LOC130987154 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | abscisic acid 8'-hydroxylase CYP707A2-like |
| 产物 | abscisic acid 8'-hydroxylase CYP707A2-like |
| Arabidopsis | AT5G45340 (CYP707A3)cytochrome P450, family 707, subfamily A, polypeptide 3 [Source:NCBI gene (formerly Entrezgene);Acc:834570] identity=70.7; qcov=1.01; evalue=0; confidence=high |
| Rice | Os02g0703600 (OsABA8OX1)- identity=66; qcov=0.945; evalue=0; confidence=high |
| GO | GO:0005506 (iron ion binding); GO:0009687 (abscisic acid metabolic process); GO:0016125 (sterol metabolic process); GO:0016709 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen); GO:0020037 (heme binding) |
| KEGG | smil00906 (Carotenoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00067 (p450) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987154 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057766778.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057766778.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057766778.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057766778.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057766778.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:49720493 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B45 |
Chr5:49720599 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C5,C77 |
Chr5:49726183 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C38 |
Chr5:49726225 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr5:49726303 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A20,B87,B99,C87,D9 |
Chr5:49726320 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C24 |
Chr5:49726519 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C54 |
Chr5:49726712 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B4,B64 |
Chr5:49726718 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057766778.1PF00067
p450 33-432 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057766778.1 |
Pfam | PF00067 |
p450 | Domain | 33 | 432 | 3e-66 | 224.8 | Cytochrome P450 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。