Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003687`

染色体: Chr05 坐标: 49987982-49997956 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003687`
名称	SmilChr05G003687
描述	pectin acetylesterase 8-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	49987982 - 49997956 / `-`

ID 对照

NCBI Gene ID	`LOC130987160`
GeneID	`130987160`
locus_tag	`-`
NCBI Name	`LOC130987160`
原始查询	`LOC130987160`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pectin acetylesterase 8-like
产物	pectin acetylesterase 8-like
Arabidopsis	`AT4G19420` (AT4G19420) Pectinacetylesterase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827683] identity=65.4; qcov=0.987; evalue=0; confidence=high
Rice	`Os02g0702400` - identity=68.2; qcov=0.969; evalue=0; confidence=high
GO	GO:0009505 (plant-type cell wall); GO:0052793 (pectin acetylesterase activity); GO:0071555 (cell wall organization)
KEGG	-
Pfam	PF03283 (PAE)
InterPro	-
eggNOG	-
NR	GeneID:130987160

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	1.00000	`XP_057766782.1`
2	Lysosome	溶酶体	0.20000	`XP_057766782.1`
3	Vesicle	囊泡	0.20000	`XP_057766782.1`
4	Nucleus	细胞核	0.00000	`XP_057766783.1`
5	Chromosome	染色体	0.00000	`XP_057766783.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:49988309`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr5:49988335`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B122,B21,C44
`Chr5:49988471`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr5:49988487`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B132,B68,C2
`Chr5:49988714`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A21,B14,B26,B66,C37
`Chr5:49988726`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B28,D10
`Chr5:49988740`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B122,B21,C44
`Chr5:49988741`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B28,D10
`Chr5:49988765`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C75
`Chr5:49988768`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:49988769`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B78
`Chr5:49988792`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B104,B53,C24,C3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766782.1

451 aa

226

451

PAE

PF03283 PAE 80-445 aa

XP_057766783.1

392 aa

196

392

PAE

PF03283 PAE 21-386 aa

XP_057766784.1

392 aa

196

392

PAE

PF03283 PAE 21-386 aa

XP_057766785.1

392 aa

196

392

PAE

PF03283 PAE 21-386 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766782.1`	Pfam	`PF03283`	PAE	Family	80	445	6e-178	592.3	Pectinacetylesterase
`XP_057766783.1`	Pfam	`PF03283`	PAE	Family	21	386	3.7e-178	592.9	Pectinacetylesterase
`XP_057766784.1`	Pfam	`PF03283`	PAE	Family	21	386	3.7e-178	592.9	Pectinacetylesterase
`XP_057766785.1`	Pfam	`PF03283`	PAE	Family	21	386	3.7e-178	592.9	Pectinacetylesterase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057910800.1
AGAATAACTGAATAAGTGTCGGTAGCCTCTTCGATTGTCTAACCGCATCTATATAAAGCTGTTATTATAGTTAAATAATTTTTAATTTCAGTTTCTTTTTTTCTATATCTGTAACCTTCATCTGCCTCTGCTTGATTCATTTACTTTTGTCTCTGTTTTCACTTGAAGAGTCTTCCAGAAACTCGAAGATTGTAGCTTCTCTATTTTATTCCAATAATCGCAGAAAAGAAAAGGGGGAACAGACCACAGGACCTGGCTTC...

XM_057910801.1
AGAATAACTGAATAAGTGTCGGTAGCCTCTTCGATTGTCTAACCGCATCTATATAAAGCTGTTATTATAGTTAAATAATTTTTAATTTCAGTTTCTTTTTTTCTATATCTGTAACCTTCATCTGCCTCTGCTTGATTCATTTACTTTTGTCTCTGTTTTCACTTGAAGAGTCTTCCAGAAACTCGAAGATTGTAGCTTCTCTATTTTATTCCAATAATCGCAGAAAAGAAAAGGGGGAACAGACCACAGGACCTGGCTTC...

CDS

4 records

下载 CDS FASTA

LOC130987160
ATGAGCAGAGCAGCAGCAGCGACGGCCCCTCCTTGGCCGCCTGCTGCTGGAGGCGCGAGGTGGAGCGGCTGCCGGCCATTCTCGCCGGAAGGAGGGCGGCGGCGCGATCAGCTTCGAGGGAGAGAGAGTGAGAGGCGATGGGATAGATTGAGAACACAAAGACTTGCACGTAGAAAAATGAATGGGAGATTGCATCAATGGGTGTTGATTCTGGTTTCTTTGATGATTTTGCTGAGAACTGAAAGCTTCTTTGTTGATAT...

LOC130987160
ATGAATGGGAGATTGCATCAATGGGTGTTGATTCTGGTTTCTTTGATGATTTTGCTGAGAACTGAAAGCTTCTTTGTTGATATCACTTATGTTCAGAGCGCTGTGGCAAAAGGAGCAGTTTGTTTGGATGGGAGTCCACCTGCATACCATTTTGACAAGGGTTTTGGAGCAGGAATCAACAATTGGTTGGTTCACATTGAGGGAGGAGGGTGGTGCAACAATGCAACGACGTGCCTAGCCCGAAAAAGCACCCGTTTAGG...

Protein

4 records

下载 Protein FASTA

XP_057766782.1
MSRAAAATAPPWPPAAGGARWSGCRPFSPEGGRRRDQLRGRESERRWDRLRTQRLARRKMNGRLHQWVLILVSLMILLRTESFFVDITYVQSAVAKGAVCLDGSPPAYHFDKGFGAGINNWLVHIEGGGWCNNATTCLARKSTRLGSSKQMAKQVVFSGIFSNKPQFNPDFYNWNRIKVRYCDGASFTGDVEAVNPATGLYYRGARVFVAVVEDLLAKGMSHAQNAVLSGCSAGGLTSILHCDRFRSLVPATTKVKCFAD...

XP_057766783.1
MNGRLHQWVLILVSLMILLRTESFFVDITYVQSAVAKGAVCLDGSPPAYHFDKGFGAGINNWLVHIEGGGWCNNATTCLARKSTRLGSSKQMAKQVVFSGIFSNKPQFNPDFYNWNRIKVRYCDGASFTGDVEAVNPATGLYYRGARVFVAVVEDLLAKGMSHAQNAVLSGCSAGGLTSILHCDRFRSLVPATTKVKCFADAGFFINTKDVSGAQHIEQFYNDVVTTHGSAKNLPQFCTSKMKPGLCFFPQNMVQGIQTP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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