当前解析结果
SmilChr05G003732| 统一新 Gene ID | SmilChr05G003732 |
|---|---|
| 名称 | SmilChr05G003732 |
| 描述 | pollen receptor-like kinase 4 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 50420391 - 50423548 / - |
| NCBI Gene ID | LOC130987170 |
|---|---|
| GeneID | 130987170 |
| locus_tag | - |
| NCBI Name | LOC130987170 |
| 原始查询 | LOC130987170 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pollen receptor-like kinase 4 |
| 产物 | pollen receptor-like kinase 4 |
| Arabidopsis | AT4G31250 (AT4G31250)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:829252] identity=45.9; qcov=1.09; evalue=0; confidence=high |
| Rice | Os06g0663000 (OsSTA176)- identity=55.8; qcov=0.564; evalue=6.62e-127; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987170 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057766797.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057766797.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057766797.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057766797.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057766797.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:50420737 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B108,B109,C16 |
Chr5:50420810 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr5:50420849 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B57 |
Chr5:50420910 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | C81 |
Chr5:50420910 |
AG |
A |
1bp_deletion | CDS_variant | 1 | C81 |
Chr5:50420911 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr5:50420992 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr5:50421023 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B13,B8 |
Chr5:50421219 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B60 |
Chr5:50421323 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr5:50421397 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr5:50421458 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C16,C42 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057766797.1PF08263
LRRNT_2 24-66 aa
PF00560
LRR_1 118-135 aa
PF13855
LRR_8 118-178 aa
PF00069
Pkinase 314-575 aa
PF07714
PK_Tyr_Ser-Thr 314-575 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057766797.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 24 | 66 | 2.1e-05 | 25.4 | Leucine rich repeat N-terminal domain |
XP_057766797.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 118 | 135 | 1.3e-10 | 39.9 | Leucine Rich Repeat |
XP_057766797.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 118 | 178 | 1.4e-07 | 31.9 | Leucine rich repeat |
XP_057766797.1 |
Pfam | PF00069 |
Pkinase | Domain | 314 | 575 | 5.5e-24 | 85.7 | Protein kinase domain |
XP_057766797.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 314 | 575 | 3.4e-23 | 83.0 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。