Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003756`

染色体: Chr05 坐标: 50723266-50737688 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003756`
名称	SmilChr05G003756
描述	uncharacterized SmilChr05G003756
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	50723266 - 50737688 / `-`

ID 对照

NCBI Gene ID	`LOC130987229`
GeneID	`130987229`
locus_tag	`-`
NCBI Name	`LOC130987229`
原始查询	`LOC130987229`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Ribosomal L18p/L5e family protein [Source:NCBI gene (formerly Entrezgene);Acc:840071]; symbol=NFD3; hit=AT1G31817; species=arabidopsis; confidence=low
产物	Ribosomal L18p/L5e family protein [Source:NCBI gene (formerly Entrezgene);Acc:840071]; symbol=NFD3; hit=AT1G31817; species=arabidopsis; confidence=low
Arabidopsis	`AT1G31817` (NFD3) Ribosomal L18p/L5e family protein [Source:NCBI gene (formerly Entrezgene);Acc:840071] identity=56.4; qcov=0.342; evalue=8.07e-46; confidence=low
Rice	`Os03g0385900` (rps11) - identity=45.2; qcov=0.347; evalue=6.99e-31; confidence=low
GO	GO:0000028 (ribosomal small subunit assembly); GO:0000462 (maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)); GO:0003735 (structural constituent of ribosome); GO:0005763 (mitochondrial small ribosomal subunit); GO:0005840 (ribosome); GO:0006412 (translation); GO:0048027 (mRNA 5'-UTR binding); GO:0070181 (small ribosomal subunit rRNA binding)
KEGG	smil03010 (Ribosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00411 (Ribosomal_S11)
InterPro	-
eggNOG	-
NR	GeneID:130987229

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057766868.1`
2	Chloroplast	叶绿体	0.80000	`XP_057766869.1`
3	Nucleus	细胞核	0.00000	`XP_057766868.1`
4	Chromosome	染色体	0.00000	`XP_057766868.1`
5	Centromere	着丝粒	0.00000	`XP_057766868.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:50723833`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C23
`Chr5:50723833`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C23
`Chr5:50723914`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B122,B68,C35
`Chr5:50724056`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr5:50724158`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A24
`Chr5:50724180`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B27,C2
`Chr5:50724460`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B38
`Chr5:50724460`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B38
`Chr5:50724633`	`AG`	`A`	1bp_deletion	frameshift_variant	1	B103
`Chr5:50724633`	`AG`	`A`	1bp_deletion	CDS_variant	1	B103
`Chr5:50725255`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766868.1

407 aa

204

407

Ribosomal_S11

PF00411 Ribosomal_S11 292-406 aa

XP_057766869.1

389 aa

194

389

Ribosomal_S11

PF00411 Ribosomal_S11 274-388 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766868.1`	Pfam	`PF00411`	Ribosomal_S11	Family	292	406	4.3e-10	40.7	Ribosomal protein S11
`XP_057766869.1`	Pfam	`PF00411`	Ribosomal_S11	Family	274	388	3.9e-10	40.8	Ribosomal protein S11

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057910885.1
GAATTTGTACAACCATTGAAATACGTCAAAGAAGAAAAATCTGATGCATCAAAACTCAAAAGACAATAAAACCCTAAATTCAAAACCCTTACCCCTAATTCATTTCAGCTGTCTGCGTTTCAAATCAAATCTCAGCAAGGAAAACCCCACAAATCAATGTTACAAGGATCTCTATTCGGGTCGGTGATTCGACCCGGCATTTACCAGCAAGCTTCTCGAGTTGGATCTGTCTCCGGTCGACAATTCCATGCCTTCTCACA...

XM_057910886.1
TCAAAAGACAATAAAACCCTAAATTCAAAACCCTTACCCCTAATTCATTTCAGCTGTCTGCGTTTCAAATCAAATCTCAGCAAGGAAAACCCCACAAATCAATGTTACAAGGATCTCTATTCGGGTCGGTGATTCGACCCGGCATTTACCAGCAAGCTTCTCGAGTTGGATCTGTCTCCGGTCGACAATTCCATGCCTTCTCACAAATTCCGACCAAAATCGGCGCCTTTTCCGATACTCGGGATTGGAACACCTTCACC...

CDS

2 records

下载 CDS FASTA

LOC130987229
ATGTTACAAGGATCTCTATTCGGGTCGGTGATTCGACCCGGCATTTACCAGCAAGCTTCTCGAGTTGGATCTGTCTCCGGTCGACAATTCCATGCCTTCTCACAAATTCCGACCAAAATCGGCGCCTTTTCCGGATTAATCAAGAGTTCGAAAAGCGAAGCACATCTTCCGTTGTCAATTTTGGAAAACCTGGGCATGAAACTGGGCTTGGTCCGAGTGACAGAGGATGTTCATTTGCCTTGTGCTTTGAGTTTCAGGAG...

LOC130987229
ATGCCTTCTCACAAATTCCGACCAAAATCGGCGCCTTTTCCGATACTCGGGATTGGAACACCTTCACCCCTGAAATCGAGATTAATCAAGAGTTCGAAAAGCGAAGCACATCTTCCGTTGTCAATTTTGGAAAACCTGGGCATGAAACTGGGCTTGGTCCGAGTGACAGAGGATGTTCATTTGCCTTGTGCTTTGAGTTTCAGGAGTTCTTTACATTCTGGAGAAAAACCAGAGGTTGAGGAAGGAAGAGATCCTAGATC...

Protein

2 records

下载 Protein FASTA

XP_057766868.1
MLQGSLFGSVIRPGIYQQASRVGSVSGRQFHAFSQIPTKIGAFSGLIKSSKSEAHLPLSILENLGMKLGLVRVTEDVHLPCALSFRSSLHSGEKPEVEEGRDPRSMDPEQATQESGNGVDGKPPLEVGVGRGPRFVGYDQLLNRERENGLNGLPPIEFGARRNLRSGGYGQLLNWERGNGVNGLPPLEVGVGRNFGSIGYDQLLNRERGNSMNRLSPLENEAGRTHPKPMDFVRGLLRDERPPRYQPEVGAGGLPRPIND...

XP_057766869.1
MPSHKFRPKSAPFPILGIGTPSPLKSRLIKSSKSEAHLPLSILENLGMKLGLVRVTEDVHLPCALSFRSSLHSGEKPEVEEGRDPRSMDPEQATQESGNGVDGKPPLEVGVGRGPRFVGYDQLLNRERENGLNGLPPIEFGARRNLRSGGYGQLLNWERGNGVNGLPPLEVGVGRNFGSIGYDQLLNRERGNSMNRLSPLENEAGRTHPKPMDFVRGLLRDERPPRYQPEVGAGGLPRPINDAQGNFQGRGYGQRGDPAF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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