Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001738`

染色体: Chr06 坐标: 20042561-20048611 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001738`
名称	SmilChr06G001738
描述	uncharacterized SmilChr06G001738
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	20042561 - 20048611 / `+`

ID 对照

NCBI Gene ID	`LOC130987386`
GeneID	`130987386`
locus_tag	`-`
NCBI Name	`LOC130987386`
原始查询	`LOC130987386`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	actin cross-linking protein (DUF569) [Source:NCBI gene (formerly Entrezgene);Acc:842262]; symbol=AT1G59710; hit=AT1G59710; species=arabidopsis; confidence=high
产物	actin cross-linking protein (DUF569) [Source:NCBI gene (formerly Entrezgene);Acc:842262]; symbol=AT1G59710; hit=AT1G59710; species=arabidopsis; confidence=high
Arabidopsis	`AT1G59710` (AT1G59710) actin cross-linking protein (DUF569) [Source:NCBI gene (formerly Entrezgene);Acc:842262] identity=52.2; qcov=1.01; evalue=2.13e-100; confidence=high
Rice	`Os07g0191600` (STR2) - identity=46.6; qcov=1.13; evalue=1.94e-88; confidence=high
GO	-
KEGG	-
Pfam	PF04601 (DUF569); PF22932 (Ubiq_DUF_assoc)
InterPro	-
eggNOG	-
NR	GeneID:130987386

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057766883.1`
2	Cytoplasm	细胞质	0.60000	`XP_057766884.1`
3	Cell membrane	细胞膜	0.20000	`XP_057766883.1`
4	Endoplasmic reticulum	内质网	0.20000	`XP_057766884.1`
5	Nucleus	细胞核	0.00000	`XP_057766883.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:20042978`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B24
`Chr6:20043163`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:20043253`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A2,C42
`Chr6:20043256`	`GA`	`G`	1bp_deletion	frameshift_variant	1	C71
`Chr6:20043256`	`GA`	`G`	1bp_deletion	CDS_variant	1	C71
`Chr6:20044084`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:20044237`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A21,B28,B90,B92,C40
`Chr6:20044257`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C13
`Chr6:20047482`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B12,B137,B55,C2
`Chr6:20047642`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A2,B136,C42
`Chr6:20047942`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr6:20047984`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B79

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766883.1

706 aa

353

706

DUF569

Ubiq_DUF_assoc

PF04601 DUF569 1-144 aa PF04601 DUF569 213-355 aa PF04601 DUF569 415-554 aa PF22932 Ubiq_DUF_assoc 615-691 aa

XP_057766884.1

297 aa

148

297

DUF569

Ubiq_DUF_assoc

PF04601 DUF569 6-145 aa PF22932 Ubiq_DUF_assoc 206-282 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766883.1`	Pfam	`PF04601`	DUF569	Domain	1	144	1.2e-189	622.1	Beta-trefoil domain of unknown function (DUF569)
`XP_057766883.1`	Pfam	`PF04601`	DUF569	Domain	213	355	1.2e-189	622.1	Beta-trefoil domain of unknown function (DUF569)
`XP_057766883.1`	Pfam	`PF04601`	DUF569	Domain	415	554	1.2e-189	622.1	Beta-trefoil domain of unknown function (DUF569)
`XP_057766883.1`	Pfam	`PF22932`	Ubiq_DUF_assoc	Domain	615	691	1.1e-09	38.7	DUF569 associated ubiquitin-like domain
`XP_057766884.1`	Pfam	`PF04601`	DUF569	Domain	6	145	9.6e-65	217.3	Beta-trefoil domain of unknown function (DUF569)
`XP_057766884.1`	Pfam	`PF22932`	Ubiq_DUF_assoc	Domain	206	282	3e-10	40.5	DUF569 associated ubiquitin-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057910900.1
TGAAATATTGAATGAAAAGATGAAAATGGAAAAAACATGTCGAGGTTGATCCAGCAAAGTCGGGACCAAATTAATTAATTACATTTCACATCACAAGTTGCATTAGAGAAATGCAGTCTACACCCATATACAAGTCAACAATCCAAGCATCTTCGAAATTTCATGTTCCAAATCAATTTCCAAATGTTTTAACCCTTTAAATCCAACAAGAAAAACCAAAACATTATTAGCAAAAAAATCATCACTATAAAGTCATGGAG...

XM_057910901.1
TATCTCTGTATATATTTATTTAAGGTGGAAAATATGAAAAAAAAATATTATAACATCAACATCTTACTATGATATTATCATGAACTGACGTGAAAATGTGTTGTTGAAACAAAAATAAAAAAGATCATGTAGAAAATATGTGAAAAGAGTGAAAAAATTATAAATATATATTTCCATTATTTTTCATTAAAAAGAACGCACCATTAAAGATTAGAAAAAAAGAGATAAAAATAATAATAAAAAAAAAAATCACTTTTTGG...

CDS

2 records

下载 CDS FASTA

LOC130987386
ATGGAGTTCTTCAACAATGCGAAAGCCGTGAGGCTGAAGAGCCACCTGGACAAGTACCTCGCCGCCGCCGACCACCAAGAAAGCGTGCGGCAAAGCCACGACGGCGCGTCGAGCAGGGCGAGATGGCACGTGGAGCTGGTGGAGGGCAACCCGCACGTGATCCGCCTGAAAACGCGGCAAGGGCTCTACCTGACCGCCTCCGACGAGTCGTATCTGCTGGGAATGACGGGAAAAAAAGTGTTGCTGCAAGCTTCCGCGAA...

LOC130987386
ATGCAGGTTTCTGGAATCGAGTTTTTCAAGAAGGCGAAATCCGTGAGGCTGAAAAGCCATCACAACAAATTCCTGACGGCCGATTCAGACGAGGAGCACGTGATCCAAGACCGATCGGGTTCCAAAAAATCGGTGAAATGGACGGTAGAATTCGTGGAAGGATCGGAAGAAGTGATACGTTTGAAGAGCTGCTATGGCAGGTACCTGAAGGCCGAGGATGAGGAGTTCCTCCTGGGCGTGACGGGCAGAAAGGTCGTCCA...

Protein

2 records

下载 Protein FASTA

XP_057766883.1
MEFFNNAKAVRLKSHLDKYLAAADHQESVRQSHDGASSRARWHVELVEGNPHVIRLKTRQGLYLTASDESYLLGMTGKKVLLQASANPKPDASVEWEPIKEGYKVKLRAKGGKFLRANGATPPWRNSVTHDLPYRTATQDWVMWDVDELDISALDDDHVYLPRLSNASSFSDSSGPSSPRGSTPGTPAAAEGLRKSIFASERSVHTSGRQDGMEFFTNAKAVRLQSHLGKYLFADDDETTVRQSRNGASRNARWAVEFVD...

XP_057766884.1
MQVSGIEFFKKAKSVRLKSHHNKFLTADSDEEHVIQDRSGSKKSVKWTVEFVEGSEEVIRLKSCYGRYLKAEDEEFLLGVTGRKVVQSLPRKLDSSVEWEPVRDGMLVKLKTRYGNYLRANGGLPPWRNSITHDIPHRHHGWILWEVDVVEIRPESPPKMEAKTPHELERSSSMDLEDEDLSSTSFHLTSPDHVAGEDHYGRKSEGRMIYYKVVDEDGNFSAGEEESFHFKGHGLEELAEKLEDVTGLEDIIVCSRNIVN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器