当前解析结果
SmilChr06G001742| 统一新 Gene ID | SmilChr06G001742 |
|---|---|
| 名称 | SmilChr06G001742 |
| 描述 | inactive LRR receptor-like serine/threonine-protein kinase BIR2 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 20089889 - 20092137 / + |
| NCBI Gene ID | LOC130987390 |
|---|---|
| GeneID | 130987390 |
| locus_tag | - |
| NCBI Name | LOC130987390 |
| 原始查询 | LOC130987390 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | inactive LRR receptor-like serine/threonine-protein kinase BIR2 |
| 产物 | inactive LRR receptor-like serine/threonine-protein kinase BIR2 |
| Arabidopsis | AT3G28450 (AT3G28450)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:822474] identity=63.6; qcov=1.01; evalue=0; confidence=high |
| Rice | Os04g0487200- identity=53; qcov=0.988; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987390 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057766886.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057766886.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057766886.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057766886.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057766886.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:20090198 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr6:20090210 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B132,B15,C3,C46,C48 |
Chr6:20090220 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
Chr6:20090230 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B131,B40,C14 |
Chr6:20090253 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B101,B82,C27,C82 |
Chr6:20090268 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C58 |
Chr6:20090270 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr6:20090274 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr6:20090292 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C74 |
Chr6:20090443 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B127 |
Chr6:20090515 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B97,C1 |
Chr6:20090580 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B101,B82,C27,C82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057766886.1PF08263
LRRNT_2 23-65 aa
PF00560
LRR_1 95-116 aa
PF13855
LRR_8 95-155 aa
PF00560
LRR_1 121-142 aa
PF00560
LRR_1 145-166 aa
PF00069
Pkinase 311-568 aa
PF07714
PK_Tyr_Ser-Thr 316-506 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057766886.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 23 | 65 | 2.4e-09 | 38.0 | Leucine rich repeat N-terminal domain |
XP_057766886.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 95 | 116 | 1.5e-14 | 51.7 | Leucine Rich Repeat |
XP_057766886.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 95 | 155 | 1.9e-09 | 37.9 | Leucine rich repeat |
XP_057766886.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 121 | 142 | 1.5e-14 | 51.7 | Leucine Rich Repeat |
XP_057766886.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 145 | 166 | 1.5e-14 | 51.7 | Leucine Rich Repeat |
XP_057766886.1 |
Pfam | PF00069 |
Pkinase | Domain | 311 | 568 | 1.6e-25 | 90.7 | Protein kinase domain |
XP_057766886.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 316 | 506 | 2.8e-29 | 102.9 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。