当前解析结果
SmilChr06G001795| 统一新 Gene ID | SmilChr06G001795 |
|---|---|
| 名称 | SmilChr06G001795 |
| 描述 | uncharacterized SmilChr06G001795 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 21035200 - 21038412 / - |
| NCBI Gene ID | LOC130987414 |
|---|---|
| GeneID | 130987414 |
| locus_tag | - |
| NCBI Name | LOC130987414 |
| 原始查询 | LOC130987414 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:821087]; symbol=AT3G01750; hit=AT3G01750; species=arabidopsis; confidence=high |
| 产物 | Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:821087]; symbol=AT3G01750; hit=AT3G01750; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G01750 (AT3G01750)Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:821087] identity=55.2; qcov=0.9; evalue=0; confidence=high |
| Rice | Os02g0601700- identity=46.5; qcov=1.09; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00023 (Ank); PF12796 (Ank_2); PF13637 (Ank_4); PF13857 (Ank_5) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987414 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057766923.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057766923.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057766923.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057766923.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057766923.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:21035493 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A19 |
Chr6:21035531 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B23,B37,B58,C5,C80 |
Chr6:21035583 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B136 |
Chr6:21035690 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B93 |
Chr6:21035724 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C30 |
Chr6:21036100 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A19,B136 |
Chr6:21036175 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B136 |
Chr6:21036300 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A16,A20,C26,C34,C83 |
Chr6:21036373 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
Chr6:21036377 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A2,B103,B47,B64,C42 |
Chr6:21036454 |
TA |
T |
1bp_deletion | frameshift_variant | 1 | C47 |
Chr6:21036454 |
TA |
T |
1bp_deletion | CDS_variant | 1 | C47 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057766923.1PF12796
Ank_2 189-276 aa
PF13637
Ank_4 224-273 aa
PF13857
Ank_5 250-291 aa
PF00023
Ank 252-284 aa
PF13857
Ank_5 328-376 aa
PF00023
Ank 334-368 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057766923.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 189 | 276 | 1.2e-30 | 106.7 | Ankyrin repeats (3 copies) |
XP_057766923.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 224 | 273 | 6.9e-23 | 80.9 | Ankyrin repeats (many copies) |
XP_057766923.1 |
Pfam | PF13857 |
Ank_5 | Repeat | 250 | 291 | 7.6e-25 | 87.4 | Ankyrin repeats (many copies) |
XP_057766923.1 |
Pfam | PF00023 |
Ank | Repeat | 252 | 284 | 3.4e-25 | 87.4 | Ankyrin repeat |
XP_057766923.1 |
Pfam | PF13857 |
Ank_5 | Repeat | 328 | 376 | 7.6e-25 | 87.4 | Ankyrin repeats (many copies) |
XP_057766923.1 |
Pfam | PF00023 |
Ank | Repeat | 334 | 368 | 3.4e-25 | 87.4 | Ankyrin repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。