当前解析结果
SmilChr06G001769| 统一新 Gene ID | SmilChr06G001769 |
|---|---|
| 名称 | SmilChr06G001769 |
| 描述 | protoporphyrinogen oxidase, mitochondrial |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 20651722 - 20660627 / - |
| NCBI Gene ID | LOC130987415 |
|---|---|
| GeneID | 130987415 |
| locus_tag | - |
| NCBI Name | LOC130987415 |
| 原始查询 | LOC130987415 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protoporphyrinogen oxidase, mitochondrial |
| 产物 | protoporphyrinogen oxidase%2C mitochondrial |
| Arabidopsis | AT5G14220 (HEMG2)Flavin containing amine oxidoreductase family [Source:NCBI gene (formerly Entrezgene);Acc:831272] identity=64.6; qcov=0.973; evalue=0; confidence=high |
| Rice | Os04g0490100- identity=61; qcov=0.593; evalue=3.92e-131; confidence=medium |
| GO | GO:0004729 (protoporphyrinogen oxidase activity, oxygen as acceptor); GO:0005743 (mitochondrial inner membrane); GO:0006783 (heme biosynthetic process) |
| KEGG | smil00860 (Porphyrin metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00890 (FAD_binding_2); PF01266 (DAO); PF01593 (Amino_oxidase); PF13450 (NAD_binding_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987415 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 0.80000 | XP_057766924.1 |
| 2 | Chloroplast | 叶绿体 | 0.80000 | XP_057766924.1 |
| 3 | Chloroplast membrane | 叶绿体膜 | 0.20000 | XP_057766924.1 |
| 4 | Chloroplast thylakoid | 类囊体 | 0.20000 | XP_057766924.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057766924.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:20652680 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B108,B2,B33,C14 |
Chr6:20652868 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B77 |
Chr6:20653043 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B96,C85 |
Chr6:20653307 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A19,A20,B104,D4 |
Chr6:20654130 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B113 |
Chr6:20656527 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | C40 |
Chr6:20656527 |
AC |
A |
1bp_deletion | CDS_variant | 1 | C40 |
Chr6:20658952 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A1 |
Chr6:20659362 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B13,B61,B84,C47 |
Chr6:20659389 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A14 |
Chr6:20659621 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A2,B101,B47,B82,C42 |
Chr6:20660506 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A2,B101,B47,B82,C42 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057766924.1PF01266
DAO 37-70 aa
PF00890
FAD_binding_2 37-83 aa
PF13450
NAD_binding_8 39-93 aa
PF01593
Amino_oxidase 44-509 aa
XP_057766925.1PF01266
DAO 37-70 aa
PF00890
FAD_binding_2 37-83 aa
PF13450
NAD_binding_8 39-93 aa
PF01593
Amino_oxidase 44-509 aa
XP_057766926.1PF01266
DAO 37-70 aa
PF00890
FAD_binding_2 37-83 aa
PF13450
NAD_binding_8 39-93 aa
PF01593
Amino_oxidase 44-509 aa
XP_057766927.1PF01266
DAO 37-70 aa
PF00890
FAD_binding_2 37-83 aa
PF13450
NAD_binding_8 39-93 aa
PF01593
Amino_oxidase 44-509 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057766924.1 |
Pfam | PF01266 |
DAO | Domain | 37 | 70 | 9.8e-09 | 35.9 | FAD dependent oxidoreductase |
XP_057766924.1 |
Pfam | PF00890 |
FAD_binding_2 | Domain | 37 | 83 | 3e-06 | 27.4 | FAD binding domain |
XP_057766924.1 |
Pfam | PF13450 |
NAD_binding_8 | Domain | 39 | 93 | 1.7e-13 | 51.4 | NAD(P)-binding Rossmann-like domain |
XP_057766924.1 |
Pfam | PF01593 |
Amino_oxidase | Domain | 44 | 509 | 1.6e-77 | 262.4 | Flavin containing amine oxidoreductase |
XP_057766925.1 |
Pfam | PF01266 |
DAO | Domain | 37 | 70 | 9.8e-09 | 35.9 | FAD dependent oxidoreductase |
XP_057766925.1 |
Pfam | PF00890 |
FAD_binding_2 | Domain | 37 | 83 | 3e-06 | 27.4 | FAD binding domain |
XP_057766925.1 |
Pfam | PF13450 |
NAD_binding_8 | Domain | 39 | 93 | 1.7e-13 | 51.4 | NAD(P)-binding Rossmann-like domain |
XP_057766925.1 |
Pfam | PF01593 |
Amino_oxidase | Domain | 44 | 509 | 1.6e-77 | 262.4 | Flavin containing amine oxidoreductase |
XP_057766926.1 |
Pfam | PF01266 |
DAO | Domain | 37 | 70 | 9.8e-09 | 35.9 | FAD dependent oxidoreductase |
XP_057766926.1 |
Pfam | PF00890 |
FAD_binding_2 | Domain | 37 | 83 | 3e-06 | 27.4 | FAD binding domain |
XP_057766926.1 |
Pfam | PF13450 |
NAD_binding_8 | Domain | 39 | 93 | 1.7e-13 | 51.4 | NAD(P)-binding Rossmann-like domain |
XP_057766926.1 |
Pfam | PF01593 |
Amino_oxidase | Domain | 44 | 509 | 1.6e-77 | 262.4 | Flavin containing amine oxidoreductase |
XP_057766927.1 |
Pfam | PF01266 |
DAO | Domain | 37 | 70 | 9.8e-09 | 35.9 | FAD dependent oxidoreductase |
XP_057766927.1 |
Pfam | PF00890 |
FAD_binding_2 | Domain | 37 | 83 | 3e-06 | 27.4 | FAD binding domain |
XP_057766927.1 |
Pfam | PF13450 |
NAD_binding_8 | Domain | 39 | 93 | 1.7e-13 | 51.4 | NAD(P)-binding Rossmann-like domain |
XP_057766927.1 |
Pfam | PF01593 |
Amino_oxidase | Domain | 44 | 509 | 1.6e-77 | 262.4 | Flavin containing amine oxidoreductase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。