Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001780`

染色体: Chr06 坐标: 20825033-20829097 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001780`
名称	SmilChr06G001780
描述	uncharacterized SmilChr06G001780
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	20825033 - 20829097 / `+`

ID 对照

NCBI Gene ID	`LOC130987417`
GeneID	`130987417`
locus_tag	`-`
NCBI Name	`LOC130987417`
原始查询	`LOC130987417`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Rubisco methyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831276]; symbol=AT5G14260; hit=AT5G14260; species=arabidopsis; confidence=high
产物	Rubisco methyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831276]; symbol=AT5G14260; hit=AT5G14260; species=arabidopsis; confidence=high
Arabidopsis	`AT5G14260` (AT5G14260) Rubisco methyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831276] identity=75.9; qcov=1.02; evalue=0; confidence=high
Rice	`Os12g0236900` - identity=73.8; qcov=0.862; evalue=0; confidence=high
GO	GO:0009570 (chloroplast stroma); GO:0016279 (protein-lysine N-methyltransferase activity); GO:0018026 (peptidyl-lysine monomethylation)
KEGG	-
Pfam	PF09273 (Rubis-subs-bind)
InterPro	-
eggNOG	-
NR	GeneID:130987417

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057766928.1`
2	Chloroplast stroma	叶绿体基质	0.80000	`XP_057766928.1`
3	Nucleus	细胞核	0.00000	`XP_057766928.1`
4	Chromosome	染色体	0.00000	`XP_057766928.1`
5	Centromere	着丝粒	0.00000	`XP_057766928.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:20825478`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B17,B77
`Chr6:20826451`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B17,B77
`Chr6:20827672`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B90,B92

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766928.1

501 aa

250

501

Rubis-subs-bind

PF09273 Rubis-subs-bind 348-470 aa

XP_057766929.1

501 aa

250

501

Rubis-subs-bind

PF09273 Rubis-subs-bind 348-470 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766928.1`	Pfam	`PF09273`	Rubis-subs-bind	Domain	348	470	8.3e-29	101.6	Rubisco LSMT substrate-binding
`XP_057766929.1`	Pfam	`PF09273`	Rubis-subs-bind	Domain	348	470	8.3e-29	101.6	Rubisco LSMT substrate-binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057910945.1
TAATGGGATAATTCCGTAGCCAATCCGTAATCATGTAAAATGTGTGGGTGACCCACATAGTCATACCGAACCAGAACCCGACCCGGTTTTCGGATTCGGATTAGATTTGTGCTTCCATCGTCTCTCTCGTTTTGGTCAAATCCAAACTCGTCGAAATATCTTCAACTCTGCCAAGTGAGCTCCGTCGACAATTTCACCACTGCCGTTTCATAAACCCTAATAGGATAAATGCATTAATCAATCGATTGAAGAGTCAATTC...

XM_057910946.1
TAATGGGATAATTCCGTAGCCAATCCGTAATCATGTAAAATGTGTGGGTGACCCACATAGTCATACCGAACCAGAACCCGACCCGGTTTTCGGATTCGGATTAGATTTGTGCTTCCATCGTCTCTCTCGTTTTGGTCAAATCCAAACTCGTCGAAATATCTTCAACTCTGCCAAGTGAGCTCCGTCGACAATTTCACCACTGCCGTTTCATAAACCCTAATAGGATAAATGCATTAATCAATCGATTGAAGAGTCAATTC...

CDS

2 records

下载 CDS FASTA

LOC130987417
ATGGACATACTGAAAAGTTCGCGCTGCATTTCAACTCCATTTCGCCCTCCGCCGCTCATTCCCCACTCTCGTCTCGCAAATGCAGTTTCTCTCGACAAAAAGCCTCGGAATATCAGAAAATGTAGAAATTTGTGCGCAGCTTCGAATTCCGACACAATTCTTAAGTCGAGCGAAATTACGAGCAAAAAGGAAGAAGATTACGGCGATTTGAAGTGTTGGATGGAGAAGAACGGGCTTCCGCCATGCAAAGTTATGCTCAA...

Protein

2 records

下载 Protein FASTA

XP_057766928.1
MDILKSSRCISTPFRPPPLIPHSRLANAVSLDKKPRNIRKCRNLCAASNSDTILKSSEITSKKEEDYGDLKCWMEKNGLPPCKVMLKERPSHDSNYHSIHYVAASEDLQEGDVAFSVPNSLVVTLERVLGNETVAELLTTNKLSELACLALYLMYEKKQGKKSFWYPYIKELDRQRGRGQLAVESPLLWSEAELEYLMGSPTMAEVLGRAEGIKREYNELDTVWFMAGSLFQQYPFDIPTEAFPFEIFKQAFVAIQSCVV...

XP_057766929.1
MDILKSSRCISTPFRPPPLIPHSRLANAVSLDKKPRNIRKCRNLCAASNSDTILKSSEITSKKEEDYGDLKCWMEKNGLPPCKVMLKERPSHDSNYHSIHYVAASEDLQEGDVAFSVPNSLVVTLERVLGNETVAELLTTNKLSELACLALYLMYEKKQGKKSFWYPYIKELDRQRGRGQLAVESPLLWSEAELEYLMGSPTMAEVLGRAEGIKREYNELDTVWFMAGSLFQQYPFDIPTEAFPFEIFKQAFVAIQSCVV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器