Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001840`

染色体: Chr06 坐标: 21595784-21598399 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001840`
名称	SmilChr06G001840
描述	uncharacterized membrane protein At3g27390-like
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	21595784 - 21598399 / `-`

ID 对照

NCBI Gene ID	`LOC130987481`
GeneID	`130987481`
locus_tag	`-`
NCBI Name	`LOC130987481`
原始查询	`LOC130987481`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:822360]; symbol=AT3G27390; hit=AT3G27390; species=arabidopsis; confidence=high
产物	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:822360]; symbol=AT3G27390; hit=AT3G27390; species=arabidopsis; confidence=high
Arabidopsis	`AT3G27390` (AT3G27390) uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:822360] identity=54.6; qcov=1.02; evalue=0; confidence=high
Rice	`Os04g0483200` - identity=54.1; qcov=0.973; evalue=0; confidence=high
GO	-
KEGG	-
Pfam	PF28741 (At3g27390_C); PF28744 (At3g27390_N)
InterPro	-
eggNOG	-
NR	GeneID:130987481

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.60000	`XP_057766997.1`
2	Endoplasmic reticulum	内质网	0.40000	`XP_057766997.1`
3	Endoplasmic reticulum membrane	内质网膜	0.40000	`XP_057766997.1`
4	Nucleus membrane	核膜	0.20000	`XP_057766998.1`
5	Nucleus	细胞核	0.00000	`XP_057766997.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:21595915`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr6:21595922`	`C`	`T`	EMS_canonical_SNV	stop_gained	31	A4,A8,B110,B113,B120,B123,B140,B20,B29,B36,B49,B53,B55,B6,B60,B78,B80,B93,B97,C18,C25,C3,C38,C5,C55,C59,C61,C71,C74,C81,C87
`Chr6:21595952`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C61
`Chr6:21595973`	`G`	`GC`	1bp_insertion	frameshift_variant	2	B49,B97
`Chr6:21595973`	`G`	`GC`	1bp_insertion	CDS_variant	2	B49,B97
`Chr6:21596009`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B123,B29,C18,C3,C61
`Chr6:21596020`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr6:21596040`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	D11,D4
`Chr6:21596104`	`G`	`A`	EMS_canonical_SNV	stop_gained	4	A4,B113,B65,C49
`Chr6:21596104`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A4,B113,B65,C49
`Chr6:21596119`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B77,C18,C63
`Chr6:21596282`	`CG`	`C`	1bp_deletion	frameshift_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057766997.1

558 aa

279

558

At3g27390_N

At3g27390_C

PF28744 At3g27390_N 19-270 aa PF28741 At3g27390_C 342-515 aa

XP_057766998.1

557 aa

278

557

At3g27390_N

At3g27390_C

PF28744 At3g27390_N 19-270 aa PF28741 At3g27390_C 338-514 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057766997.1`	Pfam	`PF28744`	At3g27390_N	Domain	19	270	4.7e-113	377.7	At3g27390, N-terminal domain
`XP_057766997.1`	Pfam	`PF28741`	At3g27390_C	Domain	342	515	5.4e-57	192.8	At3g27390, C-terminal domain
`XP_057766998.1`	Pfam	`PF28744`	At3g27390_N	Domain	19	270	4.7e-113	377.7	At3g27390, N-terminal domain
`XP_057766998.1`	Pfam	`PF28741`	At3g27390_C	Domain	338	514	2.2e-57	194.0	At3g27390, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057911015.1
GTTCATTTTTCCCCCTCGTTTTGAGAACCCCACTAGTCTTGTCTCCTAGTATTTCATGAAGTAAGAGATTAAGGTTGAGTGAAGAAAAAAACTGTCTTTTTCAATACTCCTACTTTCTTTTTCCTTCTTGAGGAAGCCATTGGCAGAAATTTGAGATCGGTTTTAGGTGATTGAGTTGATCAGAGGCAAAATGGAAACTTCTAGAGGGTTTTGGGCTTCTTTGTGGAACTTCCTATGTTTCTTGCCCTTCTTCATTGGCC...

XM_057911014.1
GTTCATTTTTCCCCCTCGTTTTGAGAACCCCACTAGTCTTGTCTCCTAGTATTTCATGAAGTAAGAGATTAAGGTTGAGTGAAGAAAAAAACTGTCTTTTTCAATACTCCTACTTTCTTTTTCCTTCTTGAGGAAGCCATTGGCAGAAATTTGAGATCGGTTTTAGGTGATTGAGTTGATCAGAGGCAAAATGGAAACTTCTAGAGGGTTTTGGGCTTCTTTGTGGAACTTCCTATGTTTCTTGCCCTTCTTCATTGGCC...

CDS

2 records

下载 CDS FASTA

LOC130987481
ATGGAAACTTCTAGAGGGTTTTGGGCTTCTTTGTGGAACTTCCTATGTTTCTTGCCCTTCTTCATTGGCCTCCTCATTCTTGGTTCCATTAAAGGTATCATAATGTGTCCAATAATACTTCTCATAGTGACAGTAGGAATTTCTGGGATAATATTACTACTTTGGCCTATGCACTGTTTCTACACATATTATTCCATTCTAAGCACAAAACAGTTTGGCCCAGCTTTGAAGCTCCTAATCTGCATATGTTTAGCTGTTAT...

Protein

2 records

下载 Protein FASTA

XP_057766997.1
METSRGFWASLWNFLCFLPFFIGLLILGSIKGIIMCPIILLIVTVGISGIILLLWPMHCFYTYYSILSTKQFGPALKLLICICLAVILISWPQIGIACSILSGAAYGLFAPILATFRAVEEGKTSKFSHCICDGTWSAVEGSFTMIRDFADVCYHSYFSIMDDVRHEEGKRYDIRLLHVPLALVAGVVGVAVDLPVISTLALCKSPYMLVKGWHRLLQDCIGREGPFLETICVPFAGLAILLWPLVVAAAVVCSILSSVF...

XP_057766998.1
METSRGFWASLWNFLCFLPFFIGLLILGSIKGIIMCPIILLIVTVGISGIILLLWPMHCFYTYYSILSTKQFGPALKLLICICLAVILISWPQIGIACSILSGAAYGLFAPILATFRAVEEGKTSKFSHCICDGTWSAVEGSFTMIRDFADVCYHSYFSIMDDVRHEEGKRYDIRLLHVPLALVAGVVGVAVDLPVISTLALCKSPYMLVKGWHRLLQDCIGREGPFLETICVPFAGLAILLWPLVVAAAVVCSILSSVF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器