Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G001893`

染色体: Chr06 坐标: 22645512-22647735 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G001893`
名称	SmilChr06G001893
描述	uncharacterized SmilChr06G001893
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	22645512 - 22647735 / `-`

ID 对照

NCBI Gene ID	`LOC130987531`
GeneID	`130987531`
locus_tag	`-`
NCBI Name	`LOC130987531`
原始查询	`LOC130987531`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Surfeit locus protein 2 (SURF2) [Source:NCBI gene (formerly Entrezgene);Acc:831295]; symbol=AT5G14440; hit=AT5G14440; species=arabidopsis; confidence=high
产物	Surfeit locus protein 2 (SURF2) [Source:NCBI gene (formerly Entrezgene);Acc:831295]; symbol=AT5G14440; hit=AT5G14440; species=arabidopsis; confidence=high
Arabidopsis	`AT5G14440` (AT5G14440) Surfeit locus protein 2 (SURF2) [Source:NCBI gene (formerly Entrezgene);Acc:831295] identity=55.4; qcov=0.724; evalue=1.82e-56; confidence=high
Rice	`Os04g0480400` - identity=47.9; qcov=0.66; evalue=2.08e-45; confidence=medium
GO	-
KEGG	-
Pfam	PF05477 (SURF2)
InterPro	-
eggNOG	-
NR	GeneID:130987531

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057767061.1`
2	Nucleolus	核仁	0.80000	`XP_057767062.1`
3	Chromosome	染色体	0.00000	`XP_057767061.1`
4	Centromere	着丝粒	0.00000	`XP_057767061.1`
5	Chromatin	染色质	0.00000	`XP_057767061.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:22645820`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B90,B92
`Chr6:22646562`	`C`	`CA`	1bp_insertion	frameshift_variant	33	A15,A4,A5,B110,B124,B127,B23,B50,B60,B62,B68,B75,B86,B87,B88,B9,B93,B95,C17,C24,C38,C51,C64,C71,C72,C74,C83,D10,D3,D4,D5,D7,D9
`Chr6:22646594`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B95,D7
`Chr6:22646866`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A1
`Chr6:22646881`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr6:22647385`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B90,B92
`Chr6:22647406`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B113,B132,B8,C3,C7
`Chr6:22647438`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A19
`Chr6:22647538`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr6:22647640`	`T`	`TA`	1bp_insertion	frameshift_variant	2	B65,C49
`Chr6:22647640`	`T`	`TA`	1bp_insertion	CDS_variant	2	B65,C49
`Chr6:22647678`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C43

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767061.1

302 aa

151

302

SURF2

PF05477 SURF2 43-252 aa

XP_057767062.1

294 aa

147

294

SURF2

PF05477 SURF2 43-281 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767061.1`	Pfam	`PF05477`	SURF2	Family	43	252	1.5e-55	189.1	Surfeit locus protein 2 (SURF2)
`XP_057767062.1`	Pfam	`PF05477`	SURF2	Family	43	281	1.7e-57	195.5	Surfeit locus protein 2 (SURF2)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057911079.1
ACTTTTACAAAACTGGAGATGATACGTTGGCACGCATATCATTATCATTTATCACACGAGCTCTGCTTTGCCCTAACCGGAATTTACAGTTTTTTATCTGGAATGGGGAAGAAGAAAGGAGAAGAAAACCCTAAATCTGACGAGCCCAAAGAGGGCCGCAATTTGCTCGGCAAGCCGAAGTTCAAGAAGCTGGAAAACGGCCGCTTCAAATGCGTGGAGACCGGCCATGAACTGCCTGCCCACGCCAGAGACGCCTACGC...

XM_057911078.1
ACTTTTACAAAACTGGAGATGATACGTTGGCACGCATATCATTATCATTTATCACACGAGCTCTGCTTTGCCCTAACCGGAATTTACAGTTTTTTATCTGGAATGGGGAAGAAGAAAGGAGAAGAAAACCCTAAATCTGACGAGCCCAAAGAGGGCCGCAATTTGCTCGGCAAGCCGAAGTTCAAGAAGCTGGAAAACGGCCGCTTCAAATGCGTGGAGACCGGCCATGAACTGCCTGCCCACGCCAGAGACGCCTACGC...

CDS

2 records

下载 CDS FASTA

LOC130987531
ATGATACGTTGGCACGCATATCATTATCATTTATCACACGAGCTCTGCTTTGCCCTAACCGGAATTTACAGTTTTTTATCTGGAATGGGGAAGAAGAAAGGAGAAGAAAACCCTAAATCTGACGAGCCCAAAGAGGGCCGCAATTTGCTCGGCAAGCCGAAGTTCAAGAAGCTGGAAAACGGCCGCTTCAAATGCGTGGAGACCGGCCATGAACTGCCTGCCCACGCCAGAGACGCCTACGCCGAATCCAAGCACTGTCG...

Protein

2 records

下载 Protein FASTA

XP_057767061.1
MIRWHAYHYHLSHELCFALTGIYSFLSGMGKKKGEENPKSDEPKEGRNLLGKPKFKKLENGRFKCVETGHELPAHARDAYAESKHCRLGLIDAALARSKPPLNMFRQDPASSSKLECKLTGLTINKSEEHIWKHMNGKRFLNMLEKFESEKETPSGVEGKPDEEKKKMKNEDGSLKNEKKKKKKNKNKKEEKKNVDEIVNEVRDSAGKSSDTEDEAEFWMPPEGERWDHDDGGDRWSDGSESAPEEDEDDGREGMSILSV...

XP_057767062.1
MIRWHAYHYHLSHELCFALTGIYSFLSGMGKKKGEENPKSDEPKEGRNLLGKPKFKKLENGRFKCVETGHELPAHARDAYAESKHCRLGLIDAALARSKPPLNMFRQDPASSSKLECKLTGLTINKSEEHIWKHMNGKRFLNMLEKFESEKETPSGVEGKPDEEKKKMKNEDGSLKNEKKKKKKNKNKKEEKKNVDEIVNEVRDSAGKSSDTEDEAEFWMPPEGERWDHDDGGDRWSDGSESAPEEDEDDGREDGGDEEA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器