当前解析结果
SmilChr01G002844| 统一新 Gene ID | SmilChr01G002844 |
|---|---|
| 名称 | SmilChr01G002844 |
| 描述 | cyclin-dependent kinase G-2-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 47012250 - 47013530 / - |
| NCBI Gene ID | LOC130987552 |
|---|---|
| GeneID | 130987552 |
| locus_tag | - |
| NCBI Name | LOC130987552 |
| 原始查询 | LOC130987552 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cyclin-dependent kinase G-2-like |
| 产物 | cyclin-dependent kinase G-2-like |
| Arabidopsis | AT1G67580 (AT1G67580)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843079] identity=54.5; qcov=1.08; evalue=3.71e-117; confidence=high |
| Rice | Os04g0488000 (CDKG)- identity=57.1; qcov=0.96; evalue=4.07e-114; confidence=high |
| GO | GO:0004693 (cyclin-dependent protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0006468 (protein phosphorylation); GO:0007346 (regulation of mitotic cell cycle) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF03109 (ABC1); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987552 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057767111.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057767111.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057767111.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057767111.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057767111.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:47012463 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C20 |
Chr1:47012780 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B134,B87 |
Chr1:47012931 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B26 |
Chr1:47012931 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B26 |
Chr1:47013051 |
G |
GT |
1bp_insertion | frameshift_variant | 2 | B56,B96 |
Chr1:47013051 |
G |
GT |
1bp_insertion | CDS_variant | 2 | B56,B96 |
Chr1:47013144 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr1:47013231 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A11 |
Chr1:47013351 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B54 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057767111.1PF07714
PK_Tyr_Ser-Thr 38-241 aa
PF00069
Pkinase 39-292 aa
PF03109
ABC1 95-185 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767111.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 38 | 241 | 2.8e-32 | 112.8 | Protein tyrosine and serine/threonine kinase |
XP_057767111.1 |
Pfam | PF00069 |
Pkinase | Domain | 39 | 292 | 2.9e-65 | 221.0 | Protein kinase domain |
XP_057767111.1 |
Pfam | PF03109 |
ABC1 | Domain | 95 | 185 | 1.1e-06 | 28.8 | ABC1 atypical kinase-like domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。