当前解析结果
SmilChr06G000017| 统一新 Gene ID | SmilChr06G000017 |
|---|---|
| 名称 | SmilChr06G000017 |
| 描述 | uncharacterized SmilChr06G000017 |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 246570 - 250200 / + |
| NCBI Gene ID | LOC130987562 |
|---|---|
| GeneID | 130987562 |
| locus_tag | - |
| NCBI Name | LOC130987562 |
| 原始查询 | LOC130987562 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | FAD-dependent oxidoreductase family protein [Source:NCBI gene (formerly Entrezgene);Acc:816796]; symbol=AT2G22650; hit=AT2G22650; species=arabidopsis; confidence=high |
| 产物 | FAD-dependent oxidoreductase family protein [Source:NCBI gene (formerly Entrezgene);Acc:816796]; symbol=AT2G22650; hit=AT2G22650; species=arabidopsis; confidence=high |
| Arabidopsis | AT2G22650 (AT2G22650)FAD-dependent oxidoreductase family protein [Source:NCBI gene (formerly Entrezgene);Acc:816796] identity=59.6; qcov=0.893; evalue=1.91e-163; confidence=high |
| Rice | Os06g0181400- identity=54.1; qcov=0.897; evalue=3.41e-145; confidence=high |
| GO | GO:0005737 (cytoplasm); GO:0016491 (oxidoreductase activity) |
| KEGG | - |
| Pfam | PF01266 (DAO) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987562 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057767122.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.60000 | XP_057767122.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057767122.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057767122.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057767122.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:246748 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B53,C42,D6 |
Chr6:247813 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | B74 |
Chr6:247813 |
AT |
A |
1bp_deletion | CDS_variant | 1 | B74 |
Chr6:247816 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B74 |
Chr6:248614 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | D10,D11 |
Chr6:248661 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:248812 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A24 |
Chr6:249687 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B20,B54,C16,C33 |
Chr6:249923 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr6:249978 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B15 |
Chr6:249978 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B15 |
Chr6:249989 |
TA |
T |
1bp_deletion | frameshift_variant | 145 | A13,A15,A18,A2,A20,A21,A24,A4,A5,A6,A7,A8,B1,B101,B102,B103,B104,B105,B106,B107,B108,B109,B11,B113,B115,B118,B12,B122,B123,B124,B127,B129,B13,B130,B131,B133,B134,B135,B136,B137,B139,B14,B140,B16,B18,B19,B2,B21,B23,B26,B28,B29,B32,B33,B35,B36,B37,B4,B40,B41,B42,B44,B45,B46,B47,B49,B5,B50,B53,B54,B58,B60,B62,B67,B68,B69,B7,B70,B71,B73,B74,B76,B78,B82,B84,B85,B86,B87,B91,B95,B98,B99,C13,C15,C17,C18,C2,C20,C21,C22,C27,C28,C3,C32,C33,C37,C38,C39,C4,C40,C43,C44,C45,C46,C47,C48,C49,C50,C52,C53,C54,C56,C59,C60,C61,C62,C65,C68,C70,C72,C74,C75,C78,C79,C82,C83,C84,C85,C86,D11,D3,D4,D5,D6,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057767122.1PF01266
DAO 47-423 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767122.1 |
Pfam | PF01266 |
DAO | Domain | 47 | 423 | 5.9e-32 | 112.3 | FAD dependent oxidoreductase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。