Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000026`

染色体: Chr06 坐标: 279482-284022 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000026`
名称	SmilChr06G000026
描述	uncharacterized SmilChr06G000026
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	279482 - 284022 / `+`

ID 对照

NCBI Gene ID	`LOC130987566`
GeneID	`130987566`
locus_tag	`-`
NCBI Name	`LOC130987566`
原始查询	`LOC130987566`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829229]; symbol=AT4G31020; hit=AT4G31020; species=arabidopsis; confidence=high
产物	alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829229]; symbol=AT4G31020; hit=AT4G31020; species=arabidopsis; confidence=high
Arabidopsis	`AT4G31020` (AT4G31020) alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829229] identity=77.5; qcov=1; evalue=1.2e-174; confidence=high
Rice	`Os02g0796600` (OsSTA82) - identity=74; qcov=0.901; evalue=9.11e-146; confidence=high
GO	-
KEGG	-
Pfam	PF00326 (Peptidase_S9); PF00561 (Abhydrolase_1); PF12146 (Hydrolase_4)
InterPro	-
eggNOG	-
NR	GeneID:130987566

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057767129.1`
2	Cytoplasm	细胞质	0.20000	`XP_057767129.1`
3	Endosome	内体	0.20000	`XP_057767129.1`
4	Nucleus	细胞核	0.00000	`XP_057767129.1`
5	Chromosome	染色体	0.00000	`XP_057767129.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:281429`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr6:283141`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr6:283162`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C19,C49

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767129.1

294 aa

147

294

Hydrolase_4

Abhydrolase_1

Peptidase_S9

PF12146 Hydrolase_4 70-174 aa PF00561 Abhydrolase_1 71-171 aa PF00326 Peptidase_S9 118-241 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767129.1`	Pfam	`PF12146`	Hydrolase_4	Domain	70	174	3.8e-12	46.8	Serine aminopeptidase, S33
`XP_057767129.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	71	171	2.6e-11	44.4	alpha/beta hydrolase fold
`XP_057767129.1`	Pfam	`PF00326`	Peptidase_S9	Domain	118	241	2e-06	28.2	Prolyl oligopeptidase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XR_009089793.1
AGGAAAAAAAAAGAAAAAAGAAAAGAAAAAAGAAACATAACAAACATGCAACACACAAATACATAAACACACATACACAAACCCAATTCCCTTCTTCTTTCTTTCGCTCCTTTCAATTCTCCTGTCTCCTTCTCCCGCTTAGATCGGATCTCCAATATCTCTATCGTCGTCAACACACGAACCCCCAAAATCCAGAAAAAAAAAAGAAGAAGAAAGAAATTAGAAGAGGGAGAGATAGGGAGAAGGGAGATTAATAACAC...

XM_057911146.1
AGAAACCAATAAATAAAAGGAAAAAAAAAGAAAAAAGAAAAGAAAAAAGAAACATAACAAACATGCAACACACAAATACATAAACACACATACACAAACCCAATTCCCTTCTTCTTTCTTTCGCTCCTTTCAATTCTCCTGTCTCCTTCTCCCGCTTAGATCGGATCTCCAATATCTCTATCGTCGTCAACACACGAACCCCCAAAATCCAGAAAAAAAAAAGAAGAAGAAAGAAATTAGAAGAGGGAGAGATAGGGAGA...

CDS

1 records

下载 CDS FASTA

LOC130987566
ATGGGAAATGTGACATCGAACGTGGCTGCAAAGTTCGCGTTTTTCCCGCCGGAGCCGCCGACGTACGACGTGTACAGTGATGAGGTGGAGGGGAAGCTGGTCATGAGCGGGCTGTCGCCGGAGAAGAACGTCGACGTGCATTTGTTGGATACAAAGCCCGGGAATAAAATCGTGGCCACGTTTTGGAGGCACCCGGCGGGGAGATTTACGCTGTTGTATTCTCACGGCAACGCCGCCGATTTAGGGCAGATGCTGGAGCT...

Protein

1 records

下载 Protein FASTA

XP_057767129.1
MGNVTSNVAAKFAFFPPEPPTYDVYSDEVEGKLVMSGLSPEKNVDVHLLDTKPGNKIVATFWRHPAGRFTLLYSHGNAADLGQMLELFLELRAHLRVNIMSYDYSGYGASSGKPSELNTYHDIEAVYECLKNEYGIKQEDVILYGQSVGSGPTLHLASRFPRLRAVVLHSAILSGIRVLYNVKVTFWFDIFKNIDKIRNVNCPVLVIHGTNDEIVDFSHGKRLWELAKEKYDPLWVKGAGHCNIETFPEYIKHLRKFVNA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器