当前解析结果
SmilChr06G000046| 统一新 Gene ID | SmilChr06G000046 |
|---|---|
| 名称 | SmilChr06G000046 |
| 描述 | CBL-interacting serine/threonine-protein kinase 6-like |
| 染色体 / SeqID | Chr06 / NC_080392.1 |
| 坐标与链方向 | 374824 - 376733 / - |
| NCBI Gene ID | LOC130987589 |
|---|---|
| GeneID | 130987589 |
| locus_tag | - |
| NCBI Name | LOC130987589 |
| 原始查询 | LOC130987589 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | CBL-interacting serine/threonine-protein kinase 6-like |
| 产物 | CBL-interacting serine/threonine-protein kinase 6-like |
| Arabidopsis | AT4G30960 (SIP3)SOS3-interacting protein 3 [Source:NCBI gene (formerly Entrezgene);Acc:829221] identity=74.3; qcov=0.977; evalue=0; confidence=high |
| Rice | Os01g0206700 (OsCIPK05)- identity=61.5; qcov=0.998; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0007165 (signal transduction) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF03109 (ABC1); PF03822 (NAF); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987589 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057767159.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057767159.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057767159.1 |
| 4 | Cell membrane | 细胞膜 | 0.20000 | XP_057767159.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057767159.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr6:375088 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D2 |
Chr6:375129 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr6:375255 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C5 |
Chr6:375342 |
CG |
C |
1bp_deletion | frameshift_variant | 64 | A1,A14,A4,A6,B108,B111,B122,B123,B124,B127,B128,B130,B17,B19,B21,B25,B26,B27,B34,B36,B39,B40,B42,B44,B45,B49,B5,B53,B6,B60,B63,B81,B82,B87,B9,B93,C13,C14,C16,C18,C24,C29,C31,C36,C39,C44,C49,C5,C52,C53,C55,C57,C6,C60,C61,C65,C70,C72,C82,C83,C84,C85,D3,D8 |
Chr6:375360 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | C24,C31,C57,C6,D3 |
Chr6:375387 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B17 |
Chr6:375393 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B17,C62 |
Chr6:375681 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr6:375783 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A14,B73,C34,C43,C84 |
Chr6:375982 |
TCG |
T |
2bp_deletion | frameshift_variant | 1 | B48 |
Chr6:375982 |
TCG |
T |
2bp_deletion | CDS_variant | 1 | B48 |
Chr6:376065 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B90,B92 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057767159.1PF00069
Pkinase 17-271 aa
PF07714
PK_Tyr_Ser-Thr 18-266 aa
PF03109
ABC1 71-172 aa
PF03822
NAF 302-361 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767159.1 |
Pfam | PF00069 |
Pkinase | Domain | 17 | 271 | 5.3e-77 | 259.5 | Protein kinase domain |
XP_057767159.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 18 | 266 | 1.9e-37 | 129.7 | Protein tyrosine and serine/threonine kinase |
XP_057767159.1 |
Pfam | PF03109 |
ABC1 | Domain | 71 | 172 | 5.9e-07 | 29.6 | ABC1 atypical kinase-like domain |
XP_057767159.1 |
Pfam | PF03822 |
NAF | Domain | 302 | 361 | 1.4e-20 | 73.9 | NAF domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。