Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr06G000060`

染色体: Chr06 坐标: 497486-500649 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr06G000060`
名称	SmilChr06G000060
描述	pentatricopeptide repeat-containing protein At4g26680, mitochondrial
染色体 / SeqID	Chr06 / NC_080392.1
坐标与链方向	497486 - 500649 / `-`

ID 对照

NCBI Gene ID	`LOC130987606`
GeneID	`130987606`
locus_tag	`-`
NCBI Name	`LOC130987606`
原始查询	`LOC130987606`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At4g26680, mitochondrial
产物	pentatricopeptide repeat-containing protein At4g26680%2C mitochondrial
Arabidopsis	`AT4G26680` (AT4G26680) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828775] identity=58.3; qcov=0.888; evalue=0; confidence=high
Rice	`Os10g0363500` - identity=37.5; qcov=0.879; evalue=5.62e-101; confidence=medium
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF10037 (MRP-S27); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:130987606

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057767178.1`
2	Nucleus	细胞核	0.00000	`XP_057767178.1`
3	Chromosome	染色体	0.00000	`XP_057767178.1`
4	Centromere	着丝粒	0.00000	`XP_057767178.1`
5	Chromatin	染色质	0.00000	`XP_057767178.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr6:498718`	`G`	`A`	EMS_canonical_SNV	stop_gained	178	A1,A10,A11,A14,A16,A18,A19,A20,A21,A22,A24,A3,A4,A5,A6,A7,A9,B1,B101,B102,B103,B105,B107,B108,B109,B11,B112,B113,B114,B117,B118,B121,B122,B123,B124,B126,B127,B129,B13,B131,B132,B133,B135,B136,B137,B138,B139,B140,B16,B18,B19,B2,B20,B21,B23,B24,B26,B29,B31,B32,B33,B35,B37,B4,B41,B42,B43,B44,B45,B46,B47,B48,B5,B50,B52,B54,B55,B56,B57,B6,B60,B62,B65,B66,B67,B68,B69,B70,B71,B74,B75,B8,B80,B82,B84,B85,B86,B87,B88,B89,B9,B94,B95,B96,B97,B98,B99,C1,C11,C13,C16,C17,C18,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C3,C30,C32,C33,C36,C37,C39,C4,C40,C41,C42,C43,C46,C47,C48,C5,C50,C52,C53,C55,C56,C57,C58,C6,C61,C62,C64,C66,C67,C68,C69,C7,C70,C71,C72,C73,C75,C76,C77,C78,C79,C8,C80,C82,C83,C85,C86,C87,D10,D3,D4,D5,D6,D7,D9
`Chr6:498760`	`TTA`	`T`	2bp_deletion	frameshift_variant	4	A13,B104,C4,C85
`Chr6:498760`	`TTA`	`T`	2bp_deletion	CDS_variant	4	A13,B104,C4,C85
`Chr6:498894`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B58
`Chr6:498927`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	D10,D11
`Chr6:498929`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B40,B73
`Chr6:498932`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B114,C24,C30,C41,C71
`Chr6:498983`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A19,B32
`Chr6:499142`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A13,C4,C85
`Chr6:499201`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr6:499279`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr6:499460`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B32

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057767178.1

550 aa

275

550

PPR_2

PPR

PPR_1

PPR

PPR_long

PPR_3

PPR_1

PPR_2

PPR

TPR_24

PPR_1

PPR

PPR_2

PPR_3

PPR_1

PPR_2

PPR

PPR_long

PPR_3

PPR_1

PPR_2

PPR

PPR_3

MRP-S27

PPR

PPR_2

PPR

PF13041 PPR_2 198-247 aa PF01535 PPR 202-230 aa PF12854 PPR_1 231-262 aa PF01535 PPR 236-266 aa PF17177 PPR_long 255-382 aa PF13812 PPR_3 257-315 aa PF12854 PPR_1 264-297 aa PF13041 PPR_2 269-317 aa PF01535 PPR 271-301 aa PF23276 TPR_24 271-365 aa PF12854 PPR_1 299-332 aa PF01535 PPR 307-335 aa PF13041 PPR_2 307-344 aa PF13812 PPR_3 307-350 aa PF12854 PPR_1 335-367 aa PF13041 PPR_2 338-387 aa PF01535 PPR 341-371 aa PF17177 PPR_long 360-496 aa PF13812 PPR_3 361-417 aa PF12854 PPR_1 370-400 aa PF13041 PPR_2 374-421 aa PF01535 PPR 377-404 aa PF13812 PPR_3 398-455 aa PF10037 MRP-S27 408-474 aa PF01535 PPR 412-441 aa PF13041 PPR_2 416-457 aa PF01535 PPR 447-474 aa PF01535 PPR 484-510 aa

XP_057767179.1

537 aa

268

537

PPR_2

PPR

PPR_1

PPR

PPR_long

PPR_3

PPR_1

PPR_2

PPR

TPR_24

PPR_1

PPR

PPR_2

PPR_3

PPR_1

PPR_2

PPR

PPR_long

PPR_3

PPR_1

PPR_2

PPR

PPR_3

MRP-S27

PPR

PPR_2

PPR

PF13041 PPR_2 198-247 aa PF01535 PPR 202-230 aa PF12854 PPR_1 231-262 aa PF01535 PPR 236-266 aa PF17177 PPR_long 255-390 aa PF13812 PPR_3 257-315 aa PF12854 PPR_1 264-297 aa PF13041 PPR_2 269-317 aa PF01535 PPR 271-301 aa PF23276 TPR_24 271-365 aa PF12854 PPR_1 299-332 aa PF01535 PPR 307-335 aa PF13041 PPR_2 307-344 aa PF13812 PPR_3 307-350 aa PF12854 PPR_1 335-367 aa PF13041 PPR_2 338-387 aa PF01535 PPR 341-371 aa PF17177 PPR_long 360-497 aa PF13812 PPR_3 361-417 aa PF12854 PPR_1 370-400 aa PF13041 PPR_2 374-421 aa PF01535 PPR 377-404 aa PF13812 PPR_3 398-455 aa PF10037 MRP-S27 408-474 aa PF01535 PPR 412-441 aa PF13041 PPR_2 416-457 aa PF01535 PPR 447-474 aa PF01535 PPR 484-510 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057767178.1`	Pfam	`PF13041`	PPR_2	Repeat	198	247	4.7e-81	267.5	PPR repeat family
`XP_057767178.1`	Pfam	`PF01535`	PPR	Repeat	202	230	3.7e-58	190.5	PPR repeat
`XP_057767178.1`	Pfam	`PF12854`	PPR_1	Repeat	231	262	9.7e-63	208.3	PPR repeat
`XP_057767178.1`	Pfam	`PF01535`	PPR	Repeat	236	266	3.7e-58	190.5	PPR repeat
`XP_057767178.1`	Pfam	`PF17177`	PPR_long	Repeat	255	382	2.3e-23	83.4	Pentacotripeptide-repeat region of PRORP
`XP_057767178.1`	Pfam	`PF13812`	PPR_3	Repeat	257	315	3.2e-42	143.2	Pentatricopeptide repeat domain
`XP_057767178.1`	Pfam	`PF12854`	PPR_1	Repeat	264	297	9.7e-63	208.3	PPR repeat
`XP_057767178.1`	Pfam	`PF13041`	PPR_2	Repeat	269	317	4.7e-81	267.5	PPR repeat family
`XP_057767178.1`	Pfam	`PF01535`	PPR	Repeat	271	301	3.7e-58	190.5	PPR repeat
`XP_057767178.1`	Pfam	`PF23276`	TPR_24	Repeat	271	365	1.1e-22	81.1	Pentatricopeptide repeat-containing protein
`XP_057767178.1`	Pfam	`PF12854`	PPR_1	Repeat	299	332	9.7e-63	208.3	PPR repeat
`XP_057767178.1`	Pfam	`PF01535`	PPR	Repeat	307	335	3.7e-58	190.5	PPR repeat
`XP_057767178.1`	Pfam	`PF13041`	PPR_2	Repeat	307	344	4.7e-81	267.5	PPR repeat family
`XP_057767178.1`	Pfam	`PF13812`	PPR_3	Repeat	307	350	3.2e-42	143.2	Pentatricopeptide repeat domain
`XP_057767178.1`	Pfam	`PF12854`	PPR_1	Repeat	335	367	9.7e-63	208.3	PPR repeat
`XP_057767178.1`	Pfam	`PF13041`	PPR_2	Repeat	338	387	4.7e-81	267.5	PPR repeat family
`XP_057767178.1`	Pfam	`PF01535`	PPR	Repeat	341	371	3.7e-58	190.5	PPR repeat
`XP_057767178.1`	Pfam	`PF17177`	PPR_long	Repeat	360	496	2.3e-23	83.4	Pentacotripeptide-repeat region of PRORP
`XP_057767178.1`	Pfam	`PF13812`	PPR_3	Repeat	361	417	3.2e-42	143.2	Pentatricopeptide repeat domain
`XP_057767178.1`	Pfam	`PF12854`	PPR_1	Repeat	370	400	9.7e-63	208.3	PPR repeat
`XP_057767178.1`	Pfam	`PF13041`	PPR_2	Repeat	374	421	4.7e-81	267.5	PPR repeat family
`XP_057767178.1`	Pfam	`PF01535`	PPR	Repeat	377	404	3.7e-58	190.5	PPR repeat
`XP_057767178.1`	Pfam	`PF13812`	PPR_3	Repeat	398	455	3.2e-42	143.2	Pentatricopeptide repeat domain
`XP_057767178.1`	Pfam	`PF10037`	MRP-S27	Repeat	408	474	9.2e-10	38.7	Mitochondrial 28S ribosomal protein S27
`XP_057767178.1`	Pfam	`PF01535`	PPR	Repeat	412	441	3.7e-58	190.5	PPR repeat
`XP_057767178.1`	Pfam	`PF13041`	PPR_2	Repeat	416	457	4.7e-81	267.5	PPR repeat family
`XP_057767178.1`	Pfam	`PF01535`	PPR	Repeat	447	474	3.7e-58	190.5	PPR repeat
`XP_057767178.1`	Pfam	`PF01535`	PPR	Repeat	484	510	3.7e-58	190.5	PPR repeat
`XP_057767179.1`	Pfam	`PF13041`	PPR_2	Repeat	198	247	2.8e-81	268.2	PPR repeat family
`XP_057767179.1`	Pfam	`PF01535`	PPR	Repeat	202	230	2.9e-58	190.8	PPR repeat
`XP_057767179.1`	Pfam	`PF12854`	PPR_1	Repeat	231	262	7.8e-63	208.6	PPR repeat
`XP_057767179.1`	Pfam	`PF01535`	PPR	Repeat	236	266	2.9e-58	190.8	PPR repeat
`XP_057767179.1`	Pfam	`PF17177`	PPR_long	Repeat	255	390	2.2e-23	83.5	Pentacotripeptide-repeat region of PRORP
`XP_057767179.1`	Pfam	`PF13812`	PPR_3	Repeat	257	315	2.4e-42	143.5	Pentatricopeptide repeat domain
`XP_057767179.1`	Pfam	`PF12854`	PPR_1	Repeat	264	297	7.8e-63	208.6	PPR repeat
`XP_057767179.1`	Pfam	`PF13041`	PPR_2	Repeat	269	317	2.8e-81	268.2	PPR repeat family
`XP_057767179.1`	Pfam	`PF01535`	PPR	Repeat	271	301	2.9e-58	190.8	PPR repeat
`XP_057767179.1`	Pfam	`PF23276`	TPR_24	Repeat	271	365	9.6e-23	81.3	Pentatricopeptide repeat-containing protein
`XP_057767179.1`	Pfam	`PF12854`	PPR_1	Repeat	299	332	7.8e-63	208.6	PPR repeat
`XP_057767179.1`	Pfam	`PF01535`	PPR	Repeat	307	335	2.9e-58	190.8	PPR repeat
`XP_057767179.1`	Pfam	`PF13041`	PPR_2	Repeat	307	344	2.8e-81	268.2	PPR repeat family
`XP_057767179.1`	Pfam	`PF13812`	PPR_3	Repeat	307	350	2.4e-42	143.5	Pentatricopeptide repeat domain
`XP_057767179.1`	Pfam	`PF12854`	PPR_1	Repeat	335	367	7.8e-63	208.6	PPR repeat
`XP_057767179.1`	Pfam	`PF13041`	PPR_2	Repeat	338	387	2.8e-81	268.2	PPR repeat family
`XP_057767179.1`	Pfam	`PF01535`	PPR	Repeat	341	371	2.9e-58	190.8	PPR repeat
`XP_057767179.1`	Pfam	`PF17177`	PPR_long	Repeat	360	497	2.2e-23	83.5	Pentacotripeptide-repeat region of PRORP
`XP_057767179.1`	Pfam	`PF13812`	PPR_3	Repeat	361	417	2.4e-42	143.5	Pentatricopeptide repeat domain
`XP_057767179.1`	Pfam	`PF12854`	PPR_1	Repeat	370	400	7.8e-63	208.6	PPR repeat
`XP_057767179.1`	Pfam	`PF13041`	PPR_2	Repeat	374	421	2.8e-81	268.2	PPR repeat family
`XP_057767179.1`	Pfam	`PF01535`	PPR	Repeat	377	404	2.9e-58	190.8	PPR repeat
`XP_057767179.1`	Pfam	`PF13812`	PPR_3	Repeat	398	455	2.4e-42	143.5	Pentatricopeptide repeat domain
`XP_057767179.1`	Pfam	`PF10037`	MRP-S27	Repeat	408	474	8.7e-10	38.8	Mitochondrial 28S ribosomal protein S27
`XP_057767179.1`	Pfam	`PF01535`	PPR	Repeat	412	441	2.9e-58	190.8	PPR repeat
`XP_057767179.1`	Pfam	`PF13041`	PPR_2	Repeat	416	457	2.8e-81	268.2	PPR repeat family
`XP_057767179.1`	Pfam	`PF01535`	PPR	Repeat	447	474	2.9e-58	190.8	PPR repeat
`XP_057767179.1`	Pfam	`PF01535`	PPR	Repeat	484	510	2.9e-58	190.8	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XR_009089806.1
TTTATTTTCAAGGGAGGAAGTATTTATTTTCAGATAAACTCCACGTTACGGCGGCGGCTGATGGTGAAGGAGCCTTCTTCCTCACTCCCGCCGGCGACGGCGTCTATCACACCTGAAACAATTGTTTGCGGCTTACTCGGTCGTCTCTCTCTCTCTCTCTCTAAAGTTTGATCTCAGTCTACCTATTCGAAAACGATGAAAAACCGCAGATTCTTCACATTCCTCGACAAAACCAAAACCCACCTCAGAAACCCGATTGA...

XR_009089808.1
TTATTTTCAAGGGAGGAAGTATTTATTTTCAGATAAACTCCACGTTACGGCGGCGGCTGATGGTGAAGGAGCCTTCTTCCTCACTCCCGCCGGCGACGGCGTCTATCACACCTGAAACAATTGTTTGCGGCTTACTCGGTCGTCTCTCTCTCTCTCTCTCTAAAGTTTGATCTCAGTCTACCTATTCGAAAACGATGAAAAACCGCAGATTCTTCACATTCCTCGACAAAACCAAAACCCACCTCAGAAACCCGATTGAG...

CDS

2 records

下载 CDS FASTA

LOC130987606
ATGAAAAACCGCAGATTCTTCACATTCCTCGACAAAACCAAAACCCACCTCAGAAACCCGATTGAGCCCCCAATTCTCCATAACCGCATCAAAAATCCCATCTTATTACCTCACAGAACGATGCCTCCTGCAAAAGGTCAAGATTCGGATTTTATAAACGTAGCTCATAGTCATCTGATTCACTCCGAATGGGATAAACTGAACAAATTATCTTCCGGTTTAACCCCATTTCGAATTAAGCACATACTGCTCAAAACCCA...

Protein

2 records

下载 Protein FASTA

XP_057767178.1
MKNRRFFTFLDKTKTHLRNPIEPPILHNRIKNPILLPHRTMPPAKGQDSDFINVAHSHLIHSEWDKLNKLSSGLTPFRIKHILLKTQKDYVISLEFFNWVELKSSQLNTLDVISIVLHILTKHRKFKSAESIMRRALETGLSDLNFPKSFFEALVYSYKMCESSSRVFDALFKTHAHMKKFRNASDCFNWMREYGFYPTVESCNAYLSALCSLSRFDIVSSFYREMQRCHISPNAYTVNMVIGAYCKADRLDLGIELFKE...

XP_057767179.1
MKNRRFFTFLDKTKTHLRNPIEPPILHNRIKNPILLPHRTMPPAKGQDSDFINVAHSHLIHSEWDKLNKLSSGLTPFRIKHILLKTQKDYVISLEFFNWVELKSSQLNTLDVISIVLHILTKHRKFKSAESIMRRALETGLSDLNFPKSFFEALVYSYKMCESSSRVFDALFKTHAHMKKFRNASDCFNWMREYGFYPTVESCNAYLSALCSLSRFDIVSSFYREMQRCHISPNAYTVNMVIGAYCKADRLDLGIELFKE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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